PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03910.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 327aa    MW: 37238.3 Da    PI: 6.6475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03910.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.92.2e-24101451128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr. 76 
                              l pG rF P d+el+ +yLk+ v+gk+++  ++ + ++d+y   ePw++ kk+++       ++k+++fF++++kk+++++r  r 
  mrna03910.1-v1.0-hybrid  10 LLPGQRFVPMDDELLLCYLKPLVHGKEVPGRDFvVFDCDLYGDqEPWEIWKKYESkrkndlrKNKDLFFFAQQKKKTPKDSRVGRt 95 
                              579************************99988769999**97549****753333233345455688******************5 PP

                      NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + + g+Wk+   +k v   +++++g kkt+ + ++ +p+  +  W+mhe++l
  mrna03910.1-v1.0-hybrid  96 VGNGGTWKEESGKKIVSPDTNRVIGHKKTFGYKNEGSPH--EGCWIMHEFEL 145
                              666999**999878777779999*********9555555..89*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-279167IPR003441NAC domain
PROSITE profilePS5100528.74310167IPR003441NAC domain
PfamPF023652.2E-1512145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDNGNHDDNL LPGQRFVPMD DELLLCYLKP LVHGKEVPGR DFVVFDCDLY GDQEPWEIWK  60
KYESKRKNDL RKNKDLFFFA QQKKKTPKDS RVGRTVGNGG TWKEESGKKI VSPDTNRVIG  120
HKKTFGYKNE GSPHEGCWIM HEFELDPSQL IHRKQETNNV LCVLRKKKDP DRETNKRKQQ  180
TSGRNSVPDD GTNNLISNKQ QRLDCEPSTS SARPPPAPLG FGALKDEHEQ FWQPPCNSNP  240
NAQALPLPYA FAGEENRGLQ QFAAGDEQYW GQQQFVVPSG GEENRNASEM GENLWQHMAG  300
HQLGTTPHPH TSSSTYIYDD VDHNFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03910.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024159969.11e-159NAC domain-containing protein 96-like
TrEMBLA0A2P6PFM04e-61A0A2P6PFM0_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.17e-16NAC domain containing protein 86