PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03900.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 1344aa    MW: 152581 Da    PI: 5.1188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03900.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.34.7e-169771036359
                               -SS-EEEEEEE--TT-SS-E.EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY    3 DgynWrKYGqKevkgsefpr.sYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                               D y+Wr Y q+++ gs++pr sYY Ct +   gC++ k+v +s+ d+k+++itY+ +H+++
  mrna03900.1-v1.0-hybrid  977 DDYSWREYDQRDIPGSRYPRrSYYVCTPQnfgGCMAMKEVRCSE-DQKILKITYRLRHTCT 1036
                               99*****************549*****998999*******9998.*************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.24E-407158IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010428.93916156IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002556.5E-4717156IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.1E-2019147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.7E-4719197IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF520582.89E-48233505IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.9E-41260501IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138557.0E-7319375IPR001611Leucine-rich repeat
PROSITE profilePS514504.832320342IPR001611Leucine-rich repeat
SMARTSM003690.0052341364IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.848343364IPR001611Leucine-rich repeat
PROSITE profilePS514504.547366388IPR001611Leucine-rich repeat
PROSITE profilePS514505.194389411IPR001611Leucine-rich repeat
SMARTSM0036987458482IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.585460482IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.9E-41533611IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.89E-48533633IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003691.3556579IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.72558579IPR001611Leucine-rich repeat
PfamPF005601.6558574IPR001611Leucine-rich repeat
PROSITE profilePS514505.063581603IPR001611Leucine-rich repeat
SuperFamilySSF1182903.53E-5901954IPR003657WRKY domain
SMARTSM007740.0038902955IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-4915954IPR003657WRKY domain
PfamPF031061.2E-5916953IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-159721038IPR003657WRKY domain
SuperFamilySSF1182901.26E-129721038IPR003657WRKY domain
SMARTSM007746.8E-119751037IPR003657WRKY domain
PROSITE profilePS5081114.1839771038IPR003657WRKY domain
PfamPF031066.4E-149771035IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1344 aa     Download sequence    Send to blast
MDDPPCSSSS SSSLPRPRDV FLSFRGEDTR NNFVTHLYGA LQRVAVKVYR DDEELKKGDD  60
LSKLFKAIEE SKISVVVFSE NYATSKWCLN ELVKIMDCKV NQKQTVIPIF YRVDPSHVRK  120
QTGSFGQAFD EHELSLGKDN DLVQSWRSAL KEASNIVGRH STNNDDDAKL IDEIVESVFN  180
KLLRMPSTNK ESDLVGMESC IQKMELGTPL QMDKDTRNVE GLMMELQSKE ERHFNAEALE  240
HMRNLRLLFF NYGPFYWGNK GENHVKGDLR FLSHKLSVLV WHRYPLKCLP STFDPKNFFQ  300
LDMPGSRIEH LWERDKRASN LTSINLTHCL YLKVTPDLTG LPNLEKLDLS YSSLTEVHPS  360
VFAHKNLVFL SLTNCYVLRS LPSTIRMKSL KTLDLSHCSS LKMFPDVPEY MEALSKLALP  420
GTAIKELPSS IDRFRGLESL DMASCENLIR LPDSICNLAK LRSLNLYRCS KLSKLPENIG  480
NMEPLLDLVV DACGLEQLPV SILRLKFGGR LSFFLCKMAA PFSSWPSSIE DRCTDVVHLD  540
FSSCNMMKLS DAIACFPSLK VLNLSRNNLE SLPAAMKELG CLEWLELNGC RRLISIPELS  600
SSISYINARD CTDLVTVITP QSPYHIGRCF NFSNCSKQVQ EDVFRDIAEN HFPPQGNPSQ  660
PFSFFCPGSE IPEQFIHHNT GASVTAKLPP NWFNNNNKFT GFAICAVTNK AQTVRCLCTF  720
KGDHCKYSFS FCLFKGGLQS NHMFVGYVPW SELGINGEQG NGRCYTEAKF EIELSLYGRH  780
PMHFVDGPYP KEICKPCIRS CGVRFFFGNN EEDFGEPMEQ VDDSEWRGLK GCLVEPSSSD  840
WTSDTSDEDE QYRELSLVFK GANRPSNYLT IEDHEDTSGQ REPLETWEQE VRSTRGMMQG  900
CLDDGYDWFL LVDGWKRCVY QCEHRPGCWA KAIVPTPNNP TIQKITYEGR HTCWKTQPML  960
TYQVRVTPGM GIECPPDDYS WREYDQRDIP GSRYPRRSYY VCTPQNFGGC MAMKEVRCSE  1020
DQKILKITYR LRHTCTLPSP SVGGRAESST RSVYDQIVQS PSSPVDNPVD DDDVNLLPDA  1080
NSLDMEHLHN TEDVANNNMD VSNQGLSGLS LRSLKKLCCC KRCKINSANR NKQEYDHLES  1140
SPPYPKLIAV AQEMPVESTK KDSEYDEEED DVDDNGIGDD DDDNDVDYNV HDDYAGFNDD  1200
VNDEDAVGGN VGRNVEVEVD NAEEHGNQSV STNTEKSSEK RELSFTNVHG ESSKKRHEVA  1260
QEQRFTDSAP LRANDEVQSA SKEISDEEYL MQCFGILNKM DEIDDDSYSK ALKLFRGDPT  1320
LRKLFVGMPE KRRKNFVLNL YCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A1e-49191829169TIR-NB-LRR type resistance protein RPV1
5ku7_B1e-49191829169TIR-NB-LRR type resistance protein RPV1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03900.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164065.10.0TMV resistance protein N-like
TrEMBLA0A2P6PG280.0A0A2P6PG28_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308455.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2620723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.35e-34WRKY family protein