PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna03879.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 372aa MW: 41128.2 Da PI: 7.3597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna03879.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.9e-13	162	234	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-.STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas....................kapskK.lsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ + ++++ +Ka+ L ++++++k+L mrna03879.1-v1.0-hybrid 162 KSHSEAERRRRERINNHLAKLRSLLPSTTkfcgssevrkkkkndkekkgNNGNVAgTDKASLLAEVIQHVKEL 234 79***********************777*************9955555559**********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	3.4E-6	13	96	No hit	No description
PROSITE profile	PS50888	14.157	159	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-10	162	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	163	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-13	163	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-11	165	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	6.6E-4	271	320	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MMCGKKEDQG ECSQTHHHQQ VQNYQEQLLL QQQQQMMQQQ QQNQNDLYGS RGLIFPHDQP 60 PPPILQPWTL PQIHAFNNNI DPFLVPPPAP SSSYASFFNR RGAPSLQFTY DGSASDHHHL 120 RILSEALGPM VQPGSAPFGL QAELGKLTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA 180 KLRSLLPSTT KFCGSSEVRK KKKNDKEKKG NNGNVAGTDK ASLLAEVIQH VKELKRQTSV 240 IAETSPVPTE TDELVVDDAS EEEGKFVIKA SLCCEDRSDL LPDLIKTLKA LRLRTLKAEI 300 TTLGGRVKNV LFITGEEDHS SSGEEQQQYC ISSIQEALKA VMEKSGGGEE SNSSGSVKRQ 360 RTTNNTNVSI L*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MMCGKKEDQG ECSQTHHHQQ VQNYQEQLLL QQQQQMMQQQ QQNQNDLYGS RGLIFPHDQP  60
PPPILQPWTL PQIHAFNNNI DPFLVPPPAP SSSYASFFNR RGAPSLQFTY DGSASDHHHL  120
RILSEALGPM VQPGSAPFGL QAELGKLTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA  180
KLRSLLPSTT KFCGSSEVRK KKKNDKEKKG NNGNVAGTDK ASLLAEVIQH VKELKRQTSV  240
IAETSPVPTE TDELVVDDAS EEEGKFVIKA SLCCEDRSDL LPDLIKTLKA LRLRTLKAEI  300
TTLGGRVKNV LFITGEEDHS SSGEEQQQYC ISSIQEALKA VMEKSGGGEE SNSSGSVKRQ  360
RTTNNTNVSI L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna03879.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297146.1	0.0	PREDICTED: transcription factor bHLH30
Refseq	XP_011462943.1	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	1e-111	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2P6R228	0.0	A0A2P6R228_ROSCH; Putative transcription factor bHLH family
STRING	XP_004297146.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-85	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna03879.1-v1.0-hybrid

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]