PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03875.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 532aa MW: 59405.1 Da PI: 5.2539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.1 | 1.3e-30 | 115 | 254 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+G++F+Ptd+e++++ L+k +g+ +++ ++ i+++d ++ ++P++Lp +k++ + +fF+ + k+y+tg+rk+r+++ mrna03875.1-v1.0-hybrid 115 LPKGVKFDPTDQEIIWHLLAKTGAGDLrpHPFIDAfITDFDgddgVLCSHPKKLP-GIKQDGSVSHFFHVAIKAYNTGTRKRRKIH 199 799************998888876665664444444887766677999*******.777888899******************855 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y +++ k+ekt+Wvmh+y+l mrna03875.1-v1.0-hybrid 200 dddygDIRWHKTGRTKPVIL-DGVQRGCKKIMVLYtsTAKGGKAEKTNWVMHQYHL 254 45544667************.99************4434556778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-37 | 100 | 273 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.849 | 115 | 273 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-14 | 116 | 254 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAQDRPSITR KHEPGSHRII GYLNTTHDCP SQANRSTEPR NLQEPQSRWS SIVIAVSPMA 60 GPSWLVDKKR IATKIRSASA SDPGRIKWQS NPTRACPNCQ YTIDNSDVSQ EWPGLPKGVK 120 FDPTDQEIIW HLLAKTGAGD LRPHPFIDAF ITDFDGDDGV LCSHPKKLPG IKQDGSVSHF 180 FHVAIKAYNT GTRKRRKIHD DDYGDIRWHK TGRTKPVILD GVQRGCKKIM VLYTSTAKGG 240 KAEKTNWVMH QYHLGTDEDE KEGEYVISKI YYQQQQVKQA DKTDQNSPES SDPVIQADPV 300 TPKSVIPDPV IQANPVTPKS VIPEALNPDF NLVEDIPITC AEPNSVTPEP PRPERRQSTL 360 GFGEGTHIAS TDPFLQMQMN HHDMDCFEDE VHHGYEQSGS HDQHSVEIPN DEAINNDVNH 420 TQEDPKWWDS ESQNLLDSQQ LVEGLSLCDD LLQSQSPIRG EHGNEPAQIK PCLADYAKLG 480 AENLKKDLEE CQNITLDPAN MELGTPPDFR LSQLEFGSQD SFLSWGGKLA E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03875.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297143.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-169 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2P6R1W6 | 0.0 | A0A2P6R1W6_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004297143.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-162 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03875.1-v1.0-hybrid |