PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03867.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 290aa    MW: 32527.9 Da    PI: 7.0898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03867.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06105124120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp Cgk+F+r  n++ H+
  mrna03867.1-v1.0-hybrid 105 FSCPVCGKTFNRFNNMQMHM 124
                              89*****************9 PP
2zf-C2H2140.00015190212123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C +Cgk+F  + + ++H +++
  mrna03867.1-v1.0-hybrid 190 FCCRKCGKPFAVRGDWRTHEKNC 212
                              77*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.27E-699127No hitNo description
SMARTSM003550.031105127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-6105124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM00355250153185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.05E-6173210No hitNo description
Gene3DG3DSA:3.30.160.605.3E-4176210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035594190210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MHHHEDEDDS VFLTLGPPGQ PVHNHVLYHQ QSSSSSSSTQ PHHQNPNYNF NHEDGVTVAL  60
HIGQPLTTSA PSSNINNNVH IGAPMEAGQY WIPSAAQILV GPTQFSCPVC GKTFNRFNNM  120
QMHMWGHGSQ YRKGPESLRG TKPSSSILRL PCYCCAEGCR NNIAHPRSRP LKDFRTLQTH  180
YKRKHGTKPF CCRKCGKPFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRSFGDG  240
HAQYAVELCA EAEEDEEEDL EDEDDNDESR DTNGGGQHHG VGTSVYFNY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03867.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298304.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2P6R1V61e-172A0A2P6R1V6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004298304.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-118C2H2-like zinc finger protein