PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03816.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 183aa MW: 20062.7 Da PI: 8.1027 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.7 | 3.7e-30 | 114 | 168 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAa +Gg+avDGC+Efm+s geeg +aal+CaACgCHRnFHRreve+ mrna03816.1-v1.0-hybrid 114 NVRYVECQKNHAAGVGGYAVDGCREFMAS-GEEG-TAALTCAACGCHRNFHRREVET 168 79**************************9.6664.689****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-15 | 111 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.0E-28 | 114 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-25 | 116 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.626 | 117 | 165 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLSKWARWNY DGKEECSPKS MKGIDKLSGG GCHSPHKKLC HRDTPWKLSE DLPDMLYIGV 60 HGVRLSTTLG AGLPGALSES FLGTLRDPRT ERMIQVKRQV VVRREEPSSY TIRNVRYVEC 120 QKNHAAGVGG YAVDGCREFM ASGEEGTAAL TCAACGCHRN FHRREVETVC ECSSPTSTNE 180 AA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03816.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1550 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 2e-22 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna03816.1-v1.0-hybrid |