PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03815.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 361aa    MW: 39153.9 Da    PI: 7.561
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03815.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.96.8e-3564121359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e+
  mrna03815.1-v1.0-hybrid  64 VVSYKECLKNHAASLGGHALDGCGEFMPSPTSTpSDPTSLKCAACGCHRNFHRRDPED 121
                              589*****************************99********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1865122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.1E-2965119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.50667118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3167118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.17E-19193262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-30194262IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-25201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDIAPSITTT TASTKSPEAD SDTPTRIQPA KPISFSNGVL KRHNPTHHHH SHHHNSNIPV  60
TPVVVSYKEC LKNHAASLGG HALDGCGEFM PSPTSTPSDP TSLKCAACGC HRNFHRRDPE  120
DNIPAVAPAT HVIEYQPHHR HHPPPPIIGH RSPNSASPPP ISSSYYPSAP HMLLALSTGL  180
SDNPNNHHGG QIVSPGGPNS RKRFRTKFSQ EQKDKMFQFA ERVGWKMQKR DEDIVHEFCN  240
EIGVDKGVLK VWMHNNKNTF AKRDGVVSGS GGALNGISAT VTARIPNNTS LDEQLHNNMN  300
GNNNNNNTSN DDDEEDDHPN HHHHNGGGSL GNIPNPNHHH YQVGRDHPHG VTNGGSSSSS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-222002591675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03815.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304301.10.0PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG04e-79ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2P6S4M11e-175A0A2P6S4M1_ROSCH; Putative transcription factor ZF-HD family
STRINGXP_004304301.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-70homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]