PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna03778.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 1107aa MW: 122711 Da PI: 7.7588

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna03778.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1.1e-09	822	863	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ rr+++NReAAr+sR+RKka++++Le+ +L++ ++L mrna03778.1-v1.0-hybrid 822 QKALRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQEL 863 5889*************************9877777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04515	4.4E-53	159	453	IPR007603	Choline transporter-like
SMART	SM00338	2.9E-7	819	882	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-6	820	866	No hit	No description
PROSITE profile	PS50217	9.381	821	865	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.5E-5	821	865	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.25E-6	823	866	No hit	No description
CDD	cd14708	2.82E-25	823	874	No hit	No description
PROSITE pattern	PS00036	0	826	841	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-30	906	979	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence Send to blast
MNNVSHSSSS SSSVNSASIS ASDPNVGRSR SGDGSQTMAA EPSRRWRDVF WLGIFMIHLI 60 LVGGALAVLG LNRFKKSDRL NLDQYTKNYL ENQKGFTEDY WPLYALAGGV GTVLGWTWLL 120 FLGSQASHMM KIAVHILTTY LAVLSVLCFW MEQFFWGVAF AIGAGLLFLY VLAVIDRLPF 180 TMLVLQAAVK MVWSLPEVMR VAYAFMLIML LWMGIWSFGA AGVVALGIGD GGRWWLLVVL 240 SVSLFWTGAV LCNTVHVIVS GMVFLVLSHG GREASSIPSK SLMKSLRYAV TTSFGSICYG 300 SLFTAAIRSL RWKIRGVRSK IGNNECLLCC VDFLFHLVET LVRFFNKYAY VQIAVSGKSF 360 NHSARDAWEL FQSTGVEALI AYDCSGAVLL MGTLLGGLIT GTCSGVWTWV KYRDRVAMVG 420 STAMLMGMIL VGIAMVVVES AVTSIYICYA EDPLLIHRWD PEFFNQMSEM LHQRLQHRSA 480 RAREVLTHNR AALQLRSELS KEVGQSGSKQ TSEAQSSCRY RSYTQTKLEM ENRKRLCDDG 540 DDGQGDHGKS HVRPFLCLHH HQDLSFSVSL TQTPNKARAV NAMLPMESAT RRSRGAEAEP 600 TVNKPLSVGA VKLLCHYQES HCWYLSFPFS IWVPLVIFSS VKWATAESER DAPGGENGGG 660 GIEFWRGGDD TQTRFADLGE LDHSATVFPH DDALDLSPSS IFSLKANNNN VAVVPNAFHY 720 ATLNTSPGCL DIGSTLSGEQ QYMYQHHKGT TSSGNNGHFE NWGDSAMAEH SQQTDTSTDI 780 DTEDKNHVNS FALVPLRGAQ HGALVVVDSN SIEQANGRTG DQKALRRLAQ NREAARKSRL 840 RKKAYVQQLE NSRLKLSQLE QELQRARQQG VFVGLSGDQG HSVAGTGALT FDFEYARWLD 900 EHQHLIHELR SAVNSHLVDN GLRIHVDSVM THYDEIFRLK SVAVKADVFH MLSGMWKTPA 960 ERCFMWLGGF RSSELLKILG NQLEPLTDQQ LMGICNLQQS SQQTEDALSQ GMEALQQSLV 1020 DTLSSTSNGS TGSDVADYMG QMAIAMGKLA TLQNFIIQAD LLRQQTLQQL YRILTTRQAA 1080 RALLVINDYF SRLRALSSLW MARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence Send to blast

MNNVSHSSSS SSSVNSASIS ASDPNVGRSR SGDGSQTMAA EPSRRWRDVF WLGIFMIHLI  60
LVGGALAVLG LNRFKKSDRL NLDQYTKNYL ENQKGFTEDY WPLYALAGGV GTVLGWTWLL  120
FLGSQASHMM KIAVHILTTY LAVLSVLCFW MEQFFWGVAF AIGAGLLFLY VLAVIDRLPF  180
TMLVLQAAVK MVWSLPEVMR VAYAFMLIML LWMGIWSFGA AGVVALGIGD GGRWWLLVVL  240
SVSLFWTGAV LCNTVHVIVS GMVFLVLSHG GREASSIPSK SLMKSLRYAV TTSFGSICYG  300
SLFTAAIRSL RWKIRGVRSK IGNNECLLCC VDFLFHLVET LVRFFNKYAY VQIAVSGKSF  360
NHSARDAWEL FQSTGVEALI AYDCSGAVLL MGTLLGGLIT GTCSGVWTWV KYRDRVAMVG  420
STAMLMGMIL VGIAMVVVES AVTSIYICYA EDPLLIHRWD PEFFNQMSEM LHQRLQHRSA  480
RAREVLTHNR AALQLRSELS KEVGQSGSKQ TSEAQSSCRY RSYTQTKLEM ENRKRLCDDG  540
DDGQGDHGKS HVRPFLCLHH HQDLSFSVSL TQTPNKARAV NAMLPMESAT RRSRGAEAEP  600
TVNKPLSVGA VKLLCHYQES HCWYLSFPFS IWVPLVIFSS VKWATAESER DAPGGENGGG  660
GIEFWRGGDD TQTRFADLGE LDHSATVFPH DDALDLSPSS IFSLKANNNN VAVVPNAFHY  720
ATLNTSPGCL DIGSTLSGEQ QYMYQHHKGT TSSGNNGHFE NWGDSAMAEH SQQTDTSTDI  780
DTEDKNHVNS FALVPLRGAQ HGALVVVDSN SIEQANGRTG DQKALRRLAQ NREAARKSRL  840
RKKAYVQQLE NSRLKLSQLE QELQRARQQG VFVGLSGDQG HSVAGTGALT FDFEYARWLD  900
EHQHLIHELR SAVNSHLVDN GLRIHVDSVM THYDEIFRLK SVAVKADVFH MLSGMWKTPA  960
ERCFMWLGGF RSSELLKILG NQLEPLTDQQ LMGICNLQQS SQQTEDALSQ GMEALQQSLV  1020
DTLSSTSNGS TGSDVADYMG QMAIAMGKLA TLQNFIIQAD LLRQQTLQQL YRILTTRQAA  1080
RALLVINDYF SRLRALSSLW MARPRD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna03778.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ008812	0.0	JQ008812.1 Rosa chinensis cultivar Old Blush perianthia mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5396	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-127	bZIP family protein

Link Out ? help Back to Top
Phytozome	mrna03778.1-v1.0-hybrid