PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03751.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 347aa MW: 38482.7 Da PI: 4.6117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6.1e-18 | 113 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GVr++k +g+W+AeIrd + + r +lg++ tae+A ka++++++++e+ mrna03751.1-v1.0-hybrid 113 SPFRGVRQRK-WGKWAAEIRDpF-----TkSRLWLGTYNTAEDASKAYEEMKLYFEK 163 679******9.**********66.....34**********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.241 | 114 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-17 | 114 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-15 | 114 | 161 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-22 | 115 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.34E-21 | 115 | 156 | No hit | No description |
Pfam | PF00847 | 4.5E-11 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MPEPRNPRLN QGNSFKKSKR EQLYPSEEPK MVRKVRIICS DPDATDDSSS EDEGIDRKFH 60 KRMVKEVTLP FHFTRPSKLV VEPQSSCNNG VKTPTPKPKL GVLSKTSKRV TNSPFRGVRQ 120 RKWGKWAAEI RDPFTKSRLW LGTYNTAEDA SKAYEEMKLY FEKKLSLATA SDVSSEKSNN 180 TTTSCSAVVS RSVNTQQPAV SSEEESDCVY SQRSPASVLD VETCASNNIH SGGESENGGY 240 MENEDVGTNA LGQLPIPNDL GFMDEQPFGQ ELNFDGIDPI SFQAEIDSLL LDEIGQFFNV 300 FGSIDDVHIG GFEGNEPSNL PDCDFGDLGK EDFACWMTET SNIQCQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03751.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299085.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_004299086.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A3S8T934 | 0.0 | A0A3S8T934_FRAAN; Transcription factor ERF47 | ||||
STRING | XP_004299085.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 3e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03751.1-v1.0-hybrid |