PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03741.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 24915.3 Da PI: 8.139 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.1 | 5.8e-28 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a +++r+ +++sl+yeA+ r+ +P G+vg+++ mrna03741.1-v1.0-hybrid 4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTFGSVGLLS 89 6************************************************************************************* PP DUF260 82 klqqqleqlkaelall 97 ++++ +q++++++l+ mrna03741.1-v1.0-hybrid 90 SGNWAQCQAAVDAVLA 105 **********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.85 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH 60 QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV DAVLAGLPIV ENNEPVPYLN 120 PFPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG 180 GGERSMQSVE TVEAPWEMNQ GKPDPVGNGD EEEVGLELTL GFGFGKLKGK A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03741.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299077.1 | 1e-170 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-71 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A2P6R1Q0 | 1e-138 | A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004299077.1 | 1e-169 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-70 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | mrna03741.1-v1.0-hybrid |