PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03713.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26607.7 Da PI: 6.7973 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2e-08 | 124 | 171 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ l+P + k + a +L ++ Y++sLq mrna03713.1-v1.0-hybrid 124 SHSLAERVRREKINDRLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 171 8*************************8....355888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.41E-11 | 118 | 175 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 118 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-16 | 120 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.173 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 124 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-8 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MELIDSLCEL ESLGANHHHE IMALSTHSLT RHHHHDQQQP QVPAAMNFST DHGPDIQRFS 60 TSRDQYDHHH VLIDQSTATE FGEQGEREKP LGGRKRKRTN TDKDMGKPKE VIHVRAKRGQ 120 ATDSHSLAER VRREKINDRL RCLQNLVPGC YKTMGMAVML DVVISYVQSL QNQIEFLSMK 180 LSAASAYYDF NSPGHADPVD TMQGTNAYEV QENMVRSEQG YGGGLPFSQS TQWPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03713.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299055.2 | 1e-179 | PREDICTED: transcription factor bHLH75 isoform X1 | ||||
Swissprot | A4D998 | 2e-51 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A2P6R1L4 | 1e-128 | A0A2P6R1L4_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004299055.1 | 1e-178 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14813 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 1e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03713.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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