PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03678.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 433aa    MW: 48462.6 Da    PI: 6.1106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03678.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10192261354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksL 54 
                              + hn+ Er+RR+ i+++++ L  l+P+++                   +++ + + a+iL  +v+++k L
  mrna03678.1-v1.0-hybrid 192 ELHNQSERNRRNAIKDKIHILGGLVPNCTkeqesmrigadesdiptrIESGVRTDQASILSDVVDHMKAL 261
                              57*************************999****************9999999**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.421189261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-7189266No hitNo description
SuperFamilySSF474595.89E-11190271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8192261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12192261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-8195267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MATGFEQADF SFLFFLEKME VNWGSRHELC LCLRVLMHIQ QTTVSQSQEH FVCWNSSVIN  60
PHTDVTVHHV NPQNQGSFMS WNSSTLNSQT DVAVNHDNPQ SQKHFILWNS STQDEIVNGL  120
PNIDQPQSIF ASQPLFSDEK VFPSDSNKER SRISKYASEL GSRDDDAVVI SEEEFTRKKN  180
KRLKKSELKK SELHNQSERN RRNAIKDKIH ILGGLVPNCT KEQESMRIGA DESDIPTRIE  240
SGVRTDQASI LSDVVDHMKA LLVQRQMLSM TGHPMWLAGV PNSITQQIPQ YMPYMGMGMG  300
SNMYGYSVRG TSHPFLSIPS APTPSLPILS ESCIVSCPQF QVPPPPLSPT TFIAAQVKPT  360
ATTTFNTIDT VVQPQPIPYT INLANQGECS TSQYNAIGTR DHNQKVPTLS EEERDGMEDR  420
IHCLLLPAEI YS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03678.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300961.10.0PREDICTED: uncharacterized protein LOC101314095
STRINGXP_004300961.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3245522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28790.13e-07bHLH family protein