PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03652.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 794aa    MW: 89211.5 Da    PI: 4.4973
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03652.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.13.4e-22256308154
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              k+r++Wtp+LH +F  a++ L G ekA Pk+il++m+vkg+t+ +v+SHLQkY+
  mrna03652.1-v1.0-hybrid 256 KKRIVWTPDLHYKFTAAISAL-GDEKARPKAILNMMGVKGVTMRQVASHLQKYK 308
                              68*******************.9******************************7 PP
2Response_reg49.42.6e-17201271109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              +l++d +   ++  +++le+  + +va++++++eal l+ e++  ++l++  i+m+++d + +l ++ e++  +p+i+++++ ++ 
  mrna03652.1-v1.0-hybrid  20 ILLIDHDTYSLKYTASVLEQYSF-NVAAVQQASEALSLISEQNhcYELVMANINMSDSDSVPFLHTLLEKD--IPVILMSSEMNDG 102
                              7999*******************.***************888888**********************9977..************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ ++l+ Ga+ fl Kp++ e+l +
  mrna03652.1-v1.0-hybrid 103 LMRKVLDKGASFFLQKPIPLEDLKN 127
                              **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.28E-1916136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.2E-2117147No hitNo description
SMARTSM004483.9E-818129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.00619133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1320127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.08E-1421132No hitNo description
Gene3DG3DSA:1.10.10.606.3E-23254313IPR009057Homeodomain-like
SuperFamilySSF466893.4E-15255313IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-19256310IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDNMSFTTDL VPEFAHGLKI LLIDHDTYSL KYTASVLEQY SFNVAAVQQA SEALSLISEQ  60
NHCYELVMAN INMSDSDSVP FLHTLLEKDI PVILMSSEMN DGLMRKVLDK GASFFLQKPI  120
PLEDLKNVWQ HVYWKTNPMK DTGKENSEEW MDWLDNGVEM NEDSEEFGHS FGGGSDKRQK  180
PYETDLEDLQ SYSTEDFFPT ESDEQKASGK KHSADNTVEQ GRMKRSKPTV QQTDSNSIAR  240
YQEGIVEKHG NDETKKKRIV WTPDLHYKFT AAISALGDEK ARPKAILNMM GVKGVTMRQV  300
ASHLQKYKNQ VRRIYQTGIF TGRTSLSNSS SWNQGTSRFG GGGKKPIESA TPSSSTRSSI  360
SAASFNNHDY RMQNRNSSHE GLSRYGNHDT NCPNDSLRTD GWFQHMNQIP ETSTLAYRNE  420
LIEYLKRRQR LGLEESNGKV TENLPSMTYM TSEVDSPNMS TNTFQLPNQP PVVHQEQYCS  480
PALIEPFNSR KQKQVSTEVL EQQKMNLPST NDLTPEAHSP YILANAYQFS NEISAVTQQK  540
KCTPVVSGPI YFEIEDKFSI EDERTELVEL MPMNLPSMNY MTPEDTSVNQ EKYHASANST  600
SSGTCNSFST EVAGTNELLN FLLDSPGKEN ITDGDASTQK SENAVQLPKE PLLREQFCTP  660
GLNGHFGTQY ENKFSERTTE LGFLEKETPS FAANNLGNLP GDFNDGSQKL DSLAGEAPPA  720
ISSNEHQPLS EYADLLNMLE DEPEEYNSFG NAPYAGNVDD YFQWLEETLF ADSTEEQQFK  780
VPDADVEPPV EDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03652.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464078.10.0PREDICTED: uncharacterized protein LOC105351463
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.12e-39pseudo-response regulator 6