PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03606.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 392aa    MW: 44500.2 Da    PI: 5.5777
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03606.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-093343682155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yp+++++  LA+++gL++rq+ +WF N+R ++
  mrna03606.1-v1.0-hybrid 334 KWPYPTEADKIALAESTGLDQRQINNWFINQRKRH 368
                              569*****************************885 PP
2ELK29.12.2e-10288309122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              +LK+ LlrK+++++g+Lk EFs
  mrna03606.1-v1.0-hybrid 288 DLKDKLLRKFGSHIGTLKLEFS 309
                              69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-22151195IPR005540KNOX1
PfamPF037906.3E-21152194IPR005540KNOX1
SMARTSM012562.2E-25204255IPR005541KNOX2
PfamPF037911.3E-24208253IPR005541KNOX2
PROSITE profilePS512139.551288308IPR005539ELK domain
SMARTSM011882.6E-5288309IPR005539ELK domain
PfamPF037898.1E-8288309IPR005539ELK domain
PROSITE profilePS5007113.005308371IPR001356Homeobox domain
SuperFamilySSF466891.07E-19309384IPR009057Homeodomain-like
SMARTSM003891.2E-13310375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-27313372IPR009057Homeodomain-like
CDDcd000861.14E-12320372No hitNo description
PfamPF059204.0E-17328367IPR008422Homeobox KN domain
PROSITE patternPS000270346369IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLVNEKGNKK EKEQGKKQGW NCGTVEGRGY IPNHSLDISL ITASKNTRSY SCNSNSISRV  60
KINLCTFFME EMYGFQSAVV DYGDKSADYA DRALMTPENL ILPMDYQSLL SSGAFRDHRV  120
PMMFGSDVGD LYSAISSAPE FRRGGDEDVF GAIKAKIASH PSYPRLIEAY IDCQKVGAPP  180
EIASFLEEIR RENDLYKRER DAAMSTCLGA DPELDEFMET YCDMLVKYKS DLARPFDEAT  240
TFLNKIETQL SNLRIRTLSD EGAASSEEEF SGGELEVQEA QTRGEDRDLK DKLLRKFGSH  300
IGTLKLEFSK KKKKGKLPKE ARQALLQWWS VHYKWPYPTE ADKIALAEST GLDQRQINNW  360
FINQRKRHWR PSENMQFAVM DNLSGPFFAD D*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03606.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299002.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-142KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2P6R1B50.0A0A2P6R1B5_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004299002.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-126KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]