PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03551.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 525aa    MW: 57980.5 Da    PI: 5.5694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03551.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.42.4e-1371545241374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+++L +cAea++++d++ +++l+++l++++s +g+p+qRl ay++e+L arla+++s +y++l+++e +   s+e l+++++++e
  mrna03551.1-v1.0-hybrid 154 LKQVLCACAEALAENDMSTTEWLMSNLRQMVSVSGEPVQRLGAYMLEGLVARLASTGSCIYASLRCKEPA---SAELLSYMHILYE 236
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qaLasRp+gpp++R+Tg+++++s   +   l  +g+rL+++Ae
  mrna03551.1-v1.0-hybrid 237 ICPYFKFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWITLIQALASRPGGPPHIRLTGIDDSTSAyaRGGGLDLVGKRLSRLAE 322
                              ***************************************************************998899999************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              + +vpfef+  +  + ++++le+L+v++gEalaVn+++ lh+++desvs+e++rd++L++vkslsP vv++veqe+++n+++F  r
  mrna03551.1-v1.0-hybrid 323 SYKVPFEFHG-AGISASEVQLEDLAVQTGEALAVNFAFTLHHMPDESVSIENHRDRLLRVVKSLSPMVVTLVEQESNTNTAPFCPR 407
                              **********.7889*********************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+ea++yy a+fds++a lpre++eri+vE+++l+reivn++aceg er+er+e l+kWr+r+++aGF+p+pls+ +++++k+ll+
  mrna03551.1-v1.0-hybrid 408 FAEAFSYYGAIFDSIDAALPREHKERINVEQHCLAREIVNIIACEGVERVERTELLSKWRSRFMMAGFSPYPLSSIINATIKTLLQ 493
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++++ y++ee++g+l+lgWk+++Lv+ +aWr
  mrna03551.1-v1.0-hybrid 494 SYSEK-YTLEERDGALYLGWKNQALVASCAWR 524
                              ***65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.193128505IPR005202Transcription factor GRAS
PfamPF035148.2E-135154524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MRATERHGSV SHKFVEQPVE APESYGFPSI HNVAIQGEHL SPHNFEQYES SSATSKYHVP  60
SSPSSLSFSA NGSPTSQPDL QSYQSSGSPL NQSCLTNDVG GLSHKIRELE SLLLGNESDV  120
LDIYGITSQV KHNQDLSGEQ NWKQMMEMIS RGDLKQVLCA CAEALAENDM STTEWLMSNL  180
RQMVSVSGEP VQRLGAYMLE GLVARLASTG SCIYASLRCK EPASAELLSY MHILYEICPY  240
FKFGYMSANG AIAEAMKDES RVHIIDFQIA QGSQWITLIQ ALASRPGGPP HIRLTGIDDS  300
TSAYARGGGL DLVGKRLSRL AESYKVPFEF HGAGISASEV QLEDLAVQTG EALAVNFAFT  360
LHHMPDESVS IENHRDRLLR VVKSLSPMVV TLVEQESNTN TAPFCPRFAE AFSYYGAIFD  420
SIDAALPREH KERINVEQHC LAREIVNIIA CEGVERVERT ELLSKWRSRF MMAGFSPYPL  480
SSIINATIKT LLQSYSEKYT LEERDGALYL GWKNQALVAS CAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6316152326378Protein SCARECROW
5b3h_A1e-6316152325377Protein SCARECROW
5b3h_D1e-6316152325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03551.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294461.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_004294462.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2P6QD520.0A0A2P6QD52_ROSCH; Putative transcription factor GRAS family
STRINGXP_004294461.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]