PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03450.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 291aa    MW: 31347.6 Da    PI: 6.998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03450.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-193180255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +g+++AeIrdp++   + r++lg+f +ae+Aa+a++aa++ l+g
  mrna03450.1-v1.0-hybrid 31 KYRGVRKRP-WGKYAAEIRDPYK---KSRVWLGTFESAEDAARAYDAAARVLRG 80
                             8********.**********765...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.4723188IPR001471AP2/ERF domain
CDDcd000181.12E-173188No hitNo description
SMARTSM003802.8E-363194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-323189IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-223189IPR016177DNA-binding domain
PfamPF008471.7E-113180IPR001471AP2/ERF domain
PRINTSPR003679.7E-113243IPR001471AP2/ERF domain
PRINTSPR003679.7E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRRGRGAATA AARGNGSPAE PNGARPIKEV KYRGVRKRPW GKYAAEIRDP YKKSRVWLGT  60
FESAEDAARA YDAAARVLRG PKAKTNFPTY SSHFCYNNPT DPNFDGKLFG SGYGFQDDNQ  120
MGPARPASSS LSSTVESFSG PRPAPQRSTT IVAAESSRRK QPRTPPMDPE DCHSDCDSSS  180
SVVEDDGEFA ASSSFRKPLE FDLNFPPLDE VDAAGGGDGG NCDAVMVQVG SGRRLPRRCT  240
CPSVHDGIFE SSEKCDWSGV VIEAAATASW AEVVVTPILA HEQESERHRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-203289664ATERF1
3gcc_A3e-203289664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03450.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294432.11e-158PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE47e-51ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A3Q8TB301e-109A0A3Q8TB30_FRAAN; Transcription factor ERF58
STRINGXP_004294432.11e-157(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-34ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]