PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03384.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 765aa    MW: 86258.5 Da    PI: 7.9335
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03384.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62e-1861180189
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............................tekerrtra 56 
                              kfY+ Y+   GFsvrk k  k++  + +++r++vCsk+gkr+e+  +                               +k++ tr 
  mrna03384.1-v1.0-hybrid  61 KFYSYYSLAKGFSVRKYKLDKNRSGTLVIRRQLVCSKQGKRKESAPNshqqgpkgkhdncqhcqqdlmgekniswqnPHKKQCTRR 146
                              6******************************************999999**************************98788888*** PP

                     FAR1  57 etrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                              +tr++C a+++v++ + +g+++ +++ +eHnH+l
  mrna03384.1-v1.0-hybrid 147 TTRINCPASFTVRLCTkRGVYYASEFITEHNHAL 180
                              **************999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1561180IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.064344382IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-4357384IPR006564Zinc finger, PMZ-type
PfamPF044340.001359378IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:3.30.1330.402.5E-45641764IPR013813Endoribonuclease L-PSP/chorismate mutase-like
TIGRFAMsTIGR000043.5E-49641763IPR006056RidA family
SuperFamilySSF552983.3E-42641764IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010422.0E-41647763IPR006175YjgF/YER057c/UK114 family
CDDcd004481.83E-42656762No hitNo description
PROSITE patternPS010940740758IPR019897RidA, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009082Biological Processbranched-chain amino acid biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0005739Cellular Componentmitochondrion
GO:0005773Cellular Componentvacuole
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0008270Molecular Functionzinc ion binding
GO:0019239Molecular Functiondeaminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDPNTEEGSN TDSSDEEIEY SNLIEEAEMQ DCTRYRGKLY KDLTFEDLKE VEFNSIEEVD  60
KFYSYYSLAK GFSVRKYKLD KNRSGTLVIR RQLVCSKQGK RKESAPNSHQ QGPKGKHDNC  120
QHCQQDLMGE KNISWQNPHK KQCTRRTTRI NCPASFTVRL CTKRGVYYAS EFITEHNHAL  180
GRHEHRQFQR SHPKKHDLAQ VNASRKVSAR TCHAYEFLVH PARGYEFVRL YNKPQGEMKE  240
VVMDGDVQSL LYEVLPRMEK TIERIRNQVL QDDYRSQNYS PVYGNHMRCL QEEIGKKFTR  300
DIFLLIKEQI NFESNFVIGQ RGVHPTTGAS LISLMQYGKP EKMWIVSYQP YESNPTFVCS  360
CKLFESDGIP CCHIFAVMKF EMLTTLPESL VNKRWTKEAT VKRTLSSSGL VSNMSVQIAR  420
YGDLMAQCVK ICHMSSYSEE GYDETREALS QLTVQSQKYW GGSEFEDSVL TQSQPGDLTR  480
HPEEARTFEF FAGYEKSKNA ALDSKITGLP DFFQYFRPFP NVWPSLRASE TGNSSATSTS  540
CRKQALLENI VSDGESNSLT HSDQREKQSE AQVRHSDMAW TAARSFHMPT IDMAALRTRA  600
PLAVGVGCAS VAGSGLWRSS ISSKPSSRFA CLATSTDTRI KEAVKTDKAP AALGPYSQAI  660
KANNVLYVSG CLGLIPETGK FVSDDVEGQT EQVLKNMGEI LKASGADYSS VVKTTILLAD  720
LKDFKAVNEI YAKYFPSPAP ARSTFQVAAL PLDAKIEIEC IAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hp7_A1e-636447644124Reactive Intermediate Deaminase A, chloroplastic
5hp8_A1e-636447644124Reactive Intermediate Deaminase A, chloroplastic
5hp8_B1e-636447644124Reactive Intermediate Deaminase A, chloroplastic
5hp8_C1e-636447644124Reactive Intermediate Deaminase A, chloroplastic
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03384.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294380.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461031.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461032.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A2P6QC951e-161A0A2P6QC95_ROSCH; Putative transcription factor FAR family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF422222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5