PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna03360.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 286aa MW: 32321.9 Da PI: 6.6087

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna03360.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	92	177	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 fYn+YA++ GF +r s+s++s +g +r fvCs +gkr ++k++ +++raetr gC+a++k+k + +gk+ v ++ +H+ mrna03360.1-v1.0-hybrid 92 FYNHYAYRFGFGTRLSTSHTS-SSGLLRDRLFVCSAKGKRGKDKRN-LYVKSHRAETRFGCRARMKIKYDLkSGKYTVVEFFADHT 175 ***************9999.7888*************999.89999*************988************ PP FAR1 87 He 88 H mrna03360.1-v1.0-hybrid 176 HV 177 *5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-16	92	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEREIPMPTN SNDLSQPDVE GTGSGDCQIS STSDFENGTD LNGFIAVESN EEESEEDTRP 60 SEKADSIHSR MRQELIPVVG MEFATEDDAL AFYNHYAYRF GFGTRLSTSH TSSSGLLRDR 120 LFVCSAKGKR GKDKRNLYVK SHRAETRFGC RARMKIKYDL KSGKYTVVEF FADHTHVTST 180 PSKTHRFRSH RKISIAQNVQ ADMAEASGLN PKETLELLSR QAGGREHLEF IPEDYRNYLR 240 SKRTREMKSG DTGGVLEYLQ RMQSNNPSFT YAIQVDADEL ITNIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna03360.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461020.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6PSC3	1e-151	A0A2P6PSC3_ROSCH; Putative transcription factor FAR family
STRING	XP_004292935.1	1e-178	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	mrna03360.1-v1.0-hybrid