PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03292.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 420aa    MW: 47415.6 Da    PI: 6.518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03292.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15159256196
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+k+l++sdv+  gr+v+pkk ae++  ++++++++ l ++d  s+ +W +k++y  +++s++yv++    +F k n+L++gD + 
  mrna03292.1-v1.0-hybrid 159 FKKELKKSDVGCWGRIVIPKKEAEKYlpSLVEKQGIVLWIRDvHSSHVWGMKYKYwaNNNSRMYVFE-SAGSFIKTNRLEVGDCIS 243
                              89**************************99999*********6666********9888999999999.99**************** PP

                              EEE-SSSEE..EEEE CS
                       B3  82 Fkldgrsefelvvkv 96 
                              ++ d+ ++f  ++++
  mrna03292.1-v1.0-hybrid 244 LYEDDGKNF--LMSF 256
                              **4333555..3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-22153259IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-18157254No hitNo description
SuperFamilySSF1019362.09E-19158257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.882159259IPR003340B3 DNA binding domain
PfamPF023621.8E-11159257IPR003340B3 DNA binding domain
SMARTSM010192.5E-13159260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEDFHQPFFP STTTTMTPIY EPMSSSPSIL ASSSMSNYYP RVQYLPPTNG GGQLYFQSLY  60
PHFQKQASQP PFQYRRHPLL LPRPQPNPVS GDQGGIESKA ARDQRRMARQ RRLFSSRSAA  120
DSVSSSSSTQ MDLCGADSDR QNTDLCTLTP DMKEIRKLFK KELKKSDVGC WGRIVIPKKE  180
AEKYLPSLVE KQGIVLWIRD VHSSHVWGMK YKYWANNNSR MYVFESAGSF IKTNRLEVGD  240
CISLYEDDGK NFLMSFRARK QYFSIDKAGT KPIHVAESSH EQKHYATNSK DDDGDSNSNS  300
ITQITNSADN HKNTNTTTYT SYSRNTKLYT PYTFNEEDEL YLAALLEDES DKVVTLSADP  360
AFSQRRLEEA NSSIDNVINS QSESSTQPAM AGIWAASSSS QSIVKMVEEH LDENDDFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-331492523106B3 domain-containing transcription factor LEC2
6j9c_D1e-331492523106B3 domain-containing transcription factor LEC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03292.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460981.10.0PREDICTED: B3 domain-containing transcription factor FUS3-like
TrEMBLA0A2P6QBN36e-74A0A2P6QBN3_ROSCH; Putative DNA-binding pseudobarrel domain-containing protein
STRINGXP_004295789.11e-131(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-34B3 family protein