PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03259.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 449aa MW: 49286.4 Da PI: 6.895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.4e-06 | 339 | 377 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L mrna03259.1-v1.0-hybrid 339 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 377 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.9 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.97E-7 | 338 | 382 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-12 | 338 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0037 | 339 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-9 | 342 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MADEYQNTGN WWDSTSRNRF ETGSSPPSSS LNSLGSFGWQ PDMIEMKSRS SMDSGSVSGT 60 SSIVFHDPQK LQGSDSSSGG DPSLHMMGLG LNSQATDWNQ AIFRGEKAET SFRSILQDNM 120 NSNANFQQET HDQQQLQWRD KLFTGSSGEM SRGFSLDQTQ FSPQYSSGES TVTCQGLSTS 180 FQMDSAALYG TSPSTILQGL LGSPHDHNQP QPPSPSIVFP YQASYGINST ELLPSWSNKV 240 PQFLRTSPPK HPSNSPHSHL QFSNNAAFWN APHEAAMKDV RPTFFPSLQP QFPTARFDEK 300 PKNISEVHQD SGAVVKKSGS EASKRPRNET SSTLPAFKVR KEKMGDRITA LQQLVSPFGK 360 TDTASVLSEA IEYIKFLHEQ VSVLSNPYMK SGAAIQHQQK SDKSKDPEGP KHDLRGRGLC 420 LVPVSSTFPA AHETTVDFWT PTFGGTFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03259.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294314.1 | 0.0 | PREDICTED: transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 3e-87 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2P6QBL1 | 0.0 | A0A2P6QBL1_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004294314.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 7e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03259.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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