PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03259.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 449aa    MW: 49286.4 Da    PI: 6.895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03259.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.4e-063393771154
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  mrna03259.1-v1.0-hybrid 339 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 377
                              5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-7338382No hitNo description
SuperFamilySSF474599.95E-12338394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0037339383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MADEYQNTGN WWDSTSRNRF ETGSSPPSSS LNSLGSFGWQ PDMIEMKSRS SMDSGSVSGT  60
SSIVFHDPQK LQGSDSSSGG DPSLHMMGLG LNSQATDWNQ AIFRGEKAET SFRSILQDNM  120
NSNANFQQET HDQQQLQWRD KLFTGSSGEM SRGFSLDQTQ FSPQYSSGES TVTCQGLSTS  180
FQMDSAALYG TSPSTILQGL LGSPHDHNQP QPPSPSIVFP YQASYGINST ELLPSWSNKV  240
PQFLRTSPPK HPSNSPHSHL QFSNNAAFWN APHEAAMKDV RPTFFPSLQP QFPTARFDEK  300
PKNISEVHQD SGAVVKKSGS EASKRPRNET SSTLPAFKVR KEKMGDRITA LQQLVSPFGK  360
TDTASVLSEA IEYIKFLHEQ VSVLSNPYMK SGAAIQHQQK SDKSKDPEGP KHDLRGRGLC  420
LVPVSSTFPA AHETTVDFWT PTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03259.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294314.10.0PREDICTED: transcription factor bHLH123-like
SwissprotQ8GXT33e-87BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2P6QBL10.0A0A2P6QBL1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004294314.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]