PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna03235.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 977aa    MW: 108890 Da    PI: 5.9449
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna03235.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.27.8e-23552605155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k++l Wt+eL +rF+e ++ + G e+A+Pktile+m+v+gLt+e+v+SHLQkYR 
  mrna03235.1-v1.0-hybrid 552 KAKLIWTQELQARFLESIHFI-GLERAVPKTILEVMNVEGLTRENVASHLQKYRQ 605
                              6799*****************.********************************5 PP
2Response_reg53.99.9e-193914889106
                              HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
             Response_reg   9 lvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                              +++ ++ ++l   +  +v + +++  a   l+ ++  +Dli++D+ +p+mdG+e+ k+ r+e  klp i+v+a + e  +l+alk+
  mrna03235.1-v1.0-hybrid 391 TFLANVSEFLHILNH-QVWTYTNPYIAFSALRVRRnfYDLIITDLYLPDMDGFEVQKRVRQEF-KLPLIIVSADDREHVILKALKL 474
                              566777888887778.899999999******999999************************99.********************** PP

                              TESEEEESS--HHH CS
             Response_reg  93 GakdflsKpfdpee 106
                              Ga  +++Kp+  ++
  mrna03235.1-v1.0-hybrid 475 GAAHYIVKPVCFDD 488
                              *********86665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd018565.81E-5127220No hitNo description
SuperFamilySSF525401.68E-2731234IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.2E-2742220IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF019261.2E-8141221IPR006073GTP binding domain
Gene3DG3DSA:1.10.1580.103.6E-5224274IPR023179GTP-binding protein, orthogonal bundle domain
PROSITE profilePS5011024.867382497IPR001789Signal transduction response regulator, receiver domain
SMARTSM004485.5E-14388493IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.7E-23389516No hitNo description
PfamPF000722.5E-15389489IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.79E-20389496No hitNo description
SuperFamilySSF521724.41E-23389499IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.608.2E-23550609IPR009057Homeodomain-like
SuperFamilySSF466895.91E-16550609IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-22552605IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MATASLAREI GMAIIKATNN SSFGRGWFSP HMAAASRAIA ERIPLVDLVL EVRDARIPLS  60
SACKQLENYT SSSKRIIVMN KVDLANHSQL KEWMNYFEQN NCISYGVNAH NKEIIKKFLT  120
FLQARVRELN NNDSSSYTAT ILLLGIPNVG KSALANSLHR IGRISAAVDS NSFLQIGCQI  180
EKGKLKHDTV SPQPGETKDI SSLKIGSHPN IYVLDTPGVL PPQIHDVEVC TKLALTGTIV  240
DYISGEKELA QCFLAILNRS NEYKKWANLS NSENGRTWID HNIECSNSSK DIKEKRQYSA  300
DHTQDFMVQN VRQTLFKVIS SFDGNVEDEM LIEEEMKAVQ GIFQVPTESK KTSCIWKVAL  360
NVNFSPGYYT FSATKKLGGF AISDGFGNDA TFLANVSEFL HILNHQVWTY TNPYIAFSAL  420
RVRRNFYDLI ITDLYLPDMD GFEVQKRVRQ EFKLPLIIVS ADDREHVILK ALKLGAAHYI  480
VKPVCFDDVK NLWQFVVNVN DRSPKKHSFV EEIESGGEQS SEAISDQDTN GDHVKKNSKR  540
RRLTKEGNAP KKAKLIWTQE LQARFLESIH FIGLERAVPK TILEVMNVEG LTRENVASHL  600
QKYRQFLRRV AAKISVSKSD IVNQSQISRS SIFGDSSASI FQQQPISGQN MFMNLNSSSL  660
GYPLFQSNDH EASTTSMPPF RNTHLYHPNS LSNFQMPQQA AFMGYPRSFQ PADNYSSVNN  720
NVESNWSSTN GLQTQTSSLT NQLYGNYNNC GMTAGFQYNN DFNNGNSWNG TMGFLNDSSS  780
LITNNNYGGF PRNSAASVGL AGFNSNPNPN LMVENHGRDS STCRLDQNVL HQDMNNASLP  840
PGNLMLSNKN FSGVEDDASS VGFGGGFTTT TVEAAAASSS NVVDLSPSNQ NQTGDYFDDL  900
HDILFNDTNL EPVNHQEEGK EVFDSYETGA SLQNSNREVI EEVEFDWLDL LDATAILENV  960
SLDEDWKKFM DTILNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1puj_A2e-25272505206conserved hypothetical protein ylqF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538542KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna03235.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470575.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A2P6SDP80.0A0A2P6SDP8_ROSCH; Putative transcription factor MYB-HB-like family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF196722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-42response regulator 2