PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna03079.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Nin-like | ||||||||
Protein Properties | Length: 248aa MW: 29044.2 Da PI: 9.0162 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 48.7 | 1.5e-15 | 157 | 202 | 3 | 48 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++ledl+ yF+l+i++A+ +L + ++Kr C ++G+ RWP+Rk mrna03079.1-v1.0-hybrid 157 ASMKLEDLRVYFHLSIEEASEKLRLPIAIVKRLCHKFGVCRWPSRK 202 6899*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.083 | 141 | 227 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-13 | 159 | 202 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGSHRHAIQE RRASVLNNYG ACKEPIYERF DFHSKSLNEV KHFLTHYCEE RKAEGYIRQP 60 DHVQSFLQGF YVAMEDEDEW EEVLSYPEEF IYEVFDIEDF GPPNSNAMQG LHVEKASSSK 120 GKGKMRGRPP KLHRFYLAEQ RERAAKMKLD AQRERAASMK LEDLRVYFHL SIEEASEKLR 180 LPIAIVKRLC HKFGVCRWPS RKQLKAISKE ISSLQPMLLS YRKGTRDYMA ARIESLEKER 240 AILLHYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna03079.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469544.1 | 1e-124 | PREDICTED: uncharacterized protein LOC105352974 | ||||
TrEMBL | A0A2P6PER9 | 2e-64 | A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 7e-10 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | mrna03079.1-v1.0-hybrid |