PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02705.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 362aa    MW: 40580.2 Da    PI: 4.6561
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02705.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99e-35421332102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++e++ed++++ ++sws+  nsf+v+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F 
  mrna02705.1-v1.0-hybrid  42 FLSKTFEMVEDPSTDPVVSWSRARNSFIVWDSHQFSSTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFL 118
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                               g+++ll++ikr+++
  mrna02705.1-v1.0-hybrid 119 GGQRHLLKTIKRRRH 133
                              ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.16E-3338131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5938131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
METVIVKEEE TITATVGSSS SSSSSLTPRP MEGLHDLGPP PFLSKTFEMV EDPSTDPVVS  60
WSRARNSFIV WDSHQFSSTL LPRYFKHNNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG  120
QRHLLKTIKR RRHVSQNMHE GGGGACVELG QYGLETELER LKRDRNVLMT EIVRLRQQQQ  180
NSKELVIAME DRLQTTEKKQ QQIMSFLAKA LKNPSFIQNF AQKRELIGVE IGRKRRLAAS  240
PSVENLQEMP TAHVLARSRS QDQGEFPTME SDFESLFSAA ALDNESSSDF KGSNLTSIPT  300
SNGGNLGTVN ETMWEDLWSE ELIGGNPEEE VVVGNDSEID VEVEDLVADP SEWGGEAYGV  360
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-254013127129Heat shock factor protein 1
5d5v_B2e-254013127129Heat shock factor protein 1
5d5v_D2e-254013127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02705.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291052.10.0PREDICTED: heat shock factor protein HSF30 isoform X2
SwissprotP411521e-133HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1B0V8A90.0A0A1B0V8A9_FRAVE; Heat shock factor A2a
STRINGXP_004291051.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-124heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]