PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02697.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 169aa    MW: 18559.4 Da    PI: 8.7719
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02697.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.93.3e-337103298
                   DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                              CaaC+++r kC +dC++apyfpa+ +++++n+hk+FG s++ kll+++p+++r++am+ ++ eA +r+ dPv G++g+i++lq ++
  mrna02697.1-v1.0-hybrid   7 CAACRFKRCKCGPDCPMAPYFPAHMHHHYKNAHKVFGESHIKKLLRSVPPHNRSTAMKHIIAEAGIRVADPVGGSYGLIRNLQLKI 92 
                              ************************************************************************************** PP

                   DUF260  88 eqlkaelallk 98 
                              ++++++l +l+
  mrna02697.1-v1.0-hybrid  93 AEEEENLRRLR 103
                              ***99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8475106IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-317102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKKHQTCAAC RFKRCKCGPD CPMAPYFPAH MHHHYKNAHK VFGESHIKKL LRSVPPHNRS  60
TAMKHIIAEA GIRVADPVGG SYGLIRNLQL KIAEEEENLR RLRDVLSVFC GGGSGDGVVA  120
QGVVQKQGCI VPGGFLHALF LQEQGNNMCV RDEVVPKHDV ESIQGEQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-21711112117LOB family transfactor Ramosa2.1
5ly0_B2e-21711112117LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02697.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292797.11e-122PREDICTED: LOB domain-containing protein 22-like isoform X1
TrEMBLA0A2P6Q1A35e-70A0A2P6Q1A3_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004292797.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-27LOB domain-containing protein 22