PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02696.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21908.6 Da PI: 9.9604 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.9e-29 | 6 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+C++ r kC++dC lapyfpa+ ++kf+n+ ++FG+s ++kll++l +++r+ am+ ++ eA+ r+ dPv G+++v+++ mrna02696.1-v1.0-hybrid 6 KCASCRHSRTKCKQDCLLAPYFPAHMHQKFKNAYQVFGRSYITKLLHNLneTPQKRNVAMKNIIAEADSRIADPVGGSYRVVKQQC 91 5************************************************766788****************************999 PP DUF260 85 qqleqlkaelallk 98 +l++l+ ++a+++ mrna02696.1-v1.0-hybrid 92 ADLSRLQWKVAQQE 105 99999988777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.26 | 5 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-27 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKNYQKCASC RHSRTKCKQD CLLAPYFPAH MHQKFKNAYQ VFGRSYITKL LHNLNETPQK 60 RNVAMKNIIA EADSRIADPV GGSYRVVKQQ CADLSRLQWK VAQQELELQQ LRRQVNANVA 120 MAQPSLYQEQ GYQNLGEQIG NANQGQGNLL HQGEGNFVQG YGQRIRQEQA SIDAQSRAYV 180 HPPSPSSSTA SSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-17 | 7 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-17 | 7 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02696.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292796.2 | 1e-144 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A2P6Q1C2 | 6e-61 | A0A2P6Q1C2_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004292796.1 | 1e-117 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32657 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 7e-24 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | mrna02696.1-v1.0-hybrid |