PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02686.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 1338aa    MW: 144746 Da    PI: 7.0013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02686.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.38e-17212245134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs C t +TplWR+gp+g+k+LCnaCG+++rk +
  mrna02686.1-v1.0-hybrid 212 CSDCSTNTTPLWRSGPRGPKSLCNACGIRQRKAR 245
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.007206242IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-15206257IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-11207245No hitNo description
Gene3DG3DSA:3.30.50.105.8E-14210245IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.82E-13211243No hitNo description
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003209.3E-15212245IPR000679Zinc finger, GATA-type
HamapMF_0071124.1543731330IPR003437Glycine dehydrogenase (decarboxylating)
PfamPF023471.4E-182382808IPR020580Glycine cleavage system P-protein, N-terminal
TIGRFAMsTIGR0046103821323IPR003437Glycine dehydrogenase (decarboxylating)
SuperFamilySSF533831.77E-103382808IPR015424Pyridoxal phosphate-dependent transferase
CDDcd006134.61E-167431808No hitNo description
Gene3DG3DSA:3.40.640.101.6E-19454685IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PfamPF023473.6E-108251101IPR020580Glycine cleavage system P-protein, N-terminal
SuperFamilySSF533832.7E-968491260IPR015424Pyridoxal phosphate-dependent transferase
CDDcd006131.21E-1508511246No hitNo description
Gene3DG3DSA:3.40.640.105.0E-398701114IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
SuperFamilySSF533832.7E-9613031325IPR015424Pyridoxal phosphate-dependent transferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006546Biological Processglycine catabolic process
GO:0046686Biological Processresponse to cadmium ion
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0009534Cellular Componentchloroplast thylakoid
GO:0009570Cellular Componentchloroplast stroma
GO:0009941Cellular Componentchloroplast envelope
GO:0048046Cellular Componentapoplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004375Molecular Functionglycine dehydrogenase (decarboxylating) activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1338 aa     Download sequence    Send to blast
MRSTPAYPNP PSFPFSLENF IADQEAAHDQ PLKLFFSSSV PNGRASCSLA FPAFFDSLSD  60
QSGISSTSIT GGDQALVYDQ RANKSIWQGE TSYDPLVCSS SSLVQPVSDD SNEEYQKLSV  120
CTDQITETNE DPESNNNRPV KWTPSTMKLM QKMTNQPDQV PENIPLTFKF QTAGRDDQHR  180
ETNTGQTSSS SSLTITNKRS SSNSGVSAAR VCSDCSTNTT PLWRSGPRGP KSLCNACGIR  240
QRKARRSMAE AGLGCGTTST ATTITAAITA KPSSISKESV VFFFILTIPM ERARRLANRA  300
FVKRLVSEAK QFRQNETSSA LLGSSSPVMF TPSRYVSSLS SFIRTNPRSD SLLGSKAGIA  360
GSQQTRSIAV EALKSSDTFA RRHNSATPEE QTKMAGLCGF DSLDSLIDAT VPKSIRLESM  420
KFSKFDEGLT ESQMLEHMKV LASKNKLFKS YIGMGYYNTY VPPVILRNIM ENPAWYTQYT  480
PYQAEIAQGR LESLLNFQTL ITDLTGLPMS NASLLDEGTA AAEAMAMCNN IQKGKKKTFV  540
IANNCHPQTI DICKTRADGF DLKVVTADLK DIDYKSGDVC GVLVQYPGTE GEVLDYGEFI  600
KNAHANGVKV VMASDLLALT LLKPPGELGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY  660
KRMMPGRIIG VSVDSSGKPA LRMAMQTREQ HIRRDKATSN ICTAQALLAN MAAMYAVYHG  720
PEGLKTISQR VHGLAGAFAV GLKKLGTVEV QSLPFFDTVK VTVGDAHAIA DAAVKNGINL  780
RVLDSKTITV SFDETTTLED VDQLFKVFAL GKPVSFTAAS LAPEVQTAIP SGLARETSYL  840
THPIFNSYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFSDLH  900
PFAPTEQAEG YQEMFTNLGD LLCTITGFDS FSLQPNAGAS GEYAGLMVIR AYHFARGDHH  960
RNVCIIPVSA HGTNPASAAM CGMKIVTIGT DAKGNINIAE LKKAAEANKD NLSALMVTYP  1020
STHGVYEEGI DEICKIIHDN GGQVYMDGAN MNAQVGLTSP GWIGADVCHL NLHKTFCIPH  1080
GGGGPGMGPI GVKAHLAPYL PSHPVVPTGG IPAPEKSQPL GTISAAPWGS ALILPISYTY  1140
IAMMGSKGLT DASKIAILNA NYMAKRLENY YPILFRGVNG TVAHEFIVDL RGFKNTAGIE  1200
AEDIAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIGQIEKGK  1260
ADIHNNVLKG APHPPSLLMG DTWSKPYSRE YAAFPASWLR SSKFWPTTGR VDNVYGDRNL  1320
ICTLQPEPVE EAAAATA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lgl_A0.0371132525975Glycine dehydrogenase [decarboxylating]
4lgl_B0.0371132525975Glycine dehydrogenase [decarboxylating]
4lhc_A0.0371132525975Glycine dehydrogenase [decarboxylating]
4lhc_B0.0371132525975Glycine dehydrogenase [decarboxylating]
4lhd_A0.0371132525975Glycine dehydrogenase [decarboxylating]
4lhd_B0.0371132525975Glycine dehydrogenase [decarboxylating]
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThe glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02686.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291039.10.0PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial
SwissprotO499540.0GCSP_SOLTU; Glycine dehydrogenase (decarboxylating), mitochondrial
TrEMBLA0A2P6Q1A40.0A0A2P6Q1A4_ROSCH; Glycine cleavage system P protein
STRINGXP_004291039.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.17e-19GATA family protein
Publications ? help Back to Top
  1. Balmer Y, et al.
    Thioredoxin links redox to the regulation of fundamental processes of plant mitochondria.
    Proc. Natl. Acad. Sci. U.S.A., 2004. 101(8): p. 2642-7
    [PMID:14983062]