PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02676.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 279aa    MW: 31567.3 Da    PI: 10.3102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02676.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11127173147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r++W+ eE+ ++++++++lG+g+ + I+++  ++R++ q+ s+ qky
  mrna02676.1-v1.0-hybrid 127 RMAWSLEEHWKFLEGIEKLGKGDRRGISKHYVTTRSPTQISSHAQKY 173
                              789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.862518IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129410.894122178IPR017930Myb domain
SuperFamilySSF466891.63E-14125179IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-14125176IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-6126172IPR009057Homeodomain-like
SMARTSM007172.1E-4126176IPR001005SANT/Myb domain
PfamPF002499.2E-8127173IPR001005SANT/Myb domain
CDDcd001671.52E-4129174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTRTCSKCGN KGHNSRTCWS TTHCYWMQQM NKPFERRYGN NSTLRLFGVQ LDRHDLSSSP  60
SSSLSATSTK VIKRQRWRKD YYNSLASSSP HFTSFLSGYQ ANKCTNRHDQ ISRADNGGLQ  120
ETNYNKRMAW SLEEHWKFLE GIEKLGKGDR RGISKHYVTT RSPTQISSHA QKYFLRLQNN  180
ITTNATATID NLHKKRRRGR PPLFDVGEDK LVSPRQQIGI IANNPNTEVS VNNPYECWPA  240
VHNSRPLLSE TNLKNVSSSQ SAAAEGDGLD LELKLATG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02676.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292789.10.0PREDICTED: myb-like protein J
STRINGXP_004292789.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3404922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-27MYB_related family protein