PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02652.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 30674.4 Da PI: 5.8872 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.2e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde l+ + + +G+g +W +++ g++R++k+c++rw++yl mrna02652.1-v1.0-hybrid 14 KGQWSPEEDEALKTYLETHGSGgNWIHLPQKAGLRRCGKSCRLRWLNYL 62 799********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ ++ +q+G++ W+ Ia+ m+ gRt++++k++w++ mrna02652.1-v1.0-hybrid 69 GHFTEEEDNIICNLYTQMGSR-WSYIAAQMP-GRTDNDVKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.04 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.785 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-25 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGQWSPE EDEALKTYLE THGSGGNWIH LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGH FTEEEDNIIC NLYTQMGSRW SYIAAQMPGR TDNDVKNYWN TKLKKKYFLP 120 AKPSLTAKES KNPNASPLTL PCAPKLETSD EFQTQIHPTL MVSDSNSGLD AYDQCLSLNP 180 NPLYNSQLMG FSQFGATSVS MSQDGSSVSD SSSIAAVDNG LLHGNNFINE DAAGISMDFG 240 FGGLPYDVVN QMWFGEKASE VVHPTCSTSL DADFFFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 14 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02652.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828542 | 1e-165 | FR828542.1 Rosa rugosa mRNA for putative MYB transcription factor (myb9 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458889.1 | 1e-173 | PREDICTED: LOW QUALITY PROTEIN: transcription factor RAX1-like | ||||
TrEMBL | A0A2P6Q136 | 1e-169 | A0A2P6Q136_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | EMJ28389 | 1e-107 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-70 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | mrna02652.1-v1.0-hybrid |