PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02650.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 340aa    MW: 37552.4 Da    PI: 7.901
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02650.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08119140426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + C++f++ G C  Gd+C FaHg
  mrna02650.1-v1.0-hybrid 119 SACPDFRK-GSCAKGDSCEFAHG 140
                              67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.31567104IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094116142IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6119140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6119142IPR000571Zinc finger, CCCH-type
SMARTSM0035648150173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.127150174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMIGNPARTL KVAPWDPFDD PTSALGSPFS VRSPSSANAG FLDSLSALHR FLPSNESDSP  60
LVDDPDMPPL VSCDQFRMFE FKVRRCARGR SHDWTECPYA HPGEKARRRD PRKYHYSGSA  120
CPDFRKGSCA KGDSCEFAHG VFECWLHPAR YRTQPCKDGL ACHRRVCFFA HTPEQLRVLP  180
GHSPRAHGPG FFDSATSPPI SPPSDSPPMS PNSPQLRLST VNELVASMRN FKLAKMQMSS  240
TPPPSWVGSP RGPLIRPDFF SLPSTPTRTP GRCGPGPFDL WEHSLVEEPA MERVESGRDL  300
RARMYAKLSK ENSMGRVDPT GISGPDVEWV SELVSEGET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02650.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458888.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-110C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P6Q1670.0A0A2P6Q167_ROSCH; Putative transcription factor C3H family
STRINGEMJ245481e-161(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-98C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]