PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02647.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 478aa    MW: 54344.9 Da    PI: 8.0553
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02647.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-093473812155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yps++e+  LA+++gL+++q+ +WF N+R ++
  mrna02647.1-v1.0-hybrid 347 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 381
                              669*****************************885 PP
2ELK37.55.2e-13301322122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK++LlrKYsgyL+sLkqE+s
  mrna02647.1-v1.0-hybrid 301 ELKNHLLRKYSGYLSSLKQELS 322
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-20114158IPR005540KNOX1
PfamPF037901.2E-22115156IPR005540KNOX1
SMARTSM012563.5E-26166217IPR005541KNOX2
PfamPF037911.5E-23171215IPR005541KNOX2
SMARTSM011883.5E-7301322IPR005539ELK domain
PfamPF037893.5E-10301322IPR005539ELK domain
PROSITE profilePS5121311.296301321IPR005539ELK domain
PROSITE profilePS5007112.957321384IPR001356Homeobox domain
SuperFamilySSF466892.31E-19322396IPR009057Homeodomain-like
SMARTSM003892.8E-13323388IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27326387IPR009057Homeodomain-like
CDDcd000862.72E-11333385No hitNo description
PfamPF059201.5E-16341380IPR008422Homeobox KN domain
PROSITE patternPS000270359382IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEEYNNSDEM DHESQGTPRG NFLYASPTLG GNYGRAAAAS DHNQQNNTFH LQSSGGECFP  60
STQSTVKTEA AGSTSQHARH KFHHPQFPPP SLVLSRGHND QQLPVQQQNE NEVEAIKAKI  120
IAHPHYSNLL QAYMDCQRVG APSEVVARLS AARQEFVARQ RSSVSSRDAS SKDPELDQFM  180
EAYYDMLVKY REELTRPIQE AMDFMKKIET QLNMLGNNST ATPLRIFSAS ALAGVVPAGL  240
SHYKIHPLLV FTRRQKVRNL DEKHSTYDKC DGNGSSEEDQ DNNSGGETEV AEIDPRAEDR  300
ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKDARQKLLS WWELHYKWPY PSESEKVALA  360
ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AAALYMDGHY IGDGHYRLEK  420
VKRLVKWTFW DLTLTLTVKA SMREKCYTIR DYDFNAAFQV GMRLGYLDQP NGGLGPK*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02647.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4137750.0HQ413775.1 Fragaria vesca knotted-like homeobox KNOX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266972.10.0homeobox protein knotted-1-like 2-like
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLF5A6B20.0F5A6B2_FRAVE; Knotted-like homeobox KNOX2
STRINGXP_004291007.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-128KNOTTED-like from Arabidopsis thaliana