PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02643.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 654aa MW: 72445.9 Da PI: 8.5619 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl mrna02643.1-v1.0-hybrid 14 RGPWSPEEDSKLKSYIELHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.8 | 8.8e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd l+ + G++ W+ Ia+ ++ gRt++++k++w++ mrna02643.1-v1.0-hybrid 69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.885 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.768 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE LHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRKEHQAAAR RSAAGLKQQE LIKRGLIISN GNNNSMVNVN PLGADSQNPY WPELPVIQGP 180 SIPNYSSPNQ EVAVPSFNDH ASIRKLLIKL GGRFHSDHQD NVVQPKIQDV YSLNVNIQLP 240 VDDQFPSSTQ QIYHEESAAN MHSSASPIAT VASNNISSPG QFAQMSDYNN HTGNAGDGDA 300 MNMFQGGQSS HYLLSNELKD MVYNIDREKL DGLEFLYSDD IMIMMNDRPI SSTTSTNTSY 360 GTDQSTMGWS GPEQMQLVYP PPPLAASGSD YHEGMQRLIM PQEQCANFCG LRENAGDKGR 420 QNQTATMAFP ASLSSPSSST PKFPLNLSKP KTSQPQKCLI LRLPHKPFQT SCAKVVSMSQ 480 FGEPNKGHNQ ALEIKVVKEK LLEAIPVTVK ELPWKRAADI ALKQMLCLGE KALKWCLVAF 540 FVLSFFSDVI FSISRNRELV IPFGLFVGCF VTEILKEALQ LVLPVSEEKG FEKHLIGIGC 600 LFAAVKFISY GLPIQAQVIV LNVANGGFLQ VLWLWRGLFN RSDVGNSAMD VTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02643.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292782.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
TrEMBL | A0A2P6Q127 | 0.0 | A0A2P6Q127_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004292782.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-76 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | mrna02643.1-v1.0-hybrid |