PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02623.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 621aa    MW: 68378.6 Da    PI: 7.0731
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02623.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.8e-12261317155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  mrna02623.1-v1.0-hybrid 261 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 317
                              78*******************77776664346655.77******************98 PP
2AP247.44.8e-15360411155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  mrna02623.1-v1.0-hybrid 360 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATQEEAAEAYDIAAIKFRG 411
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9261317IPR001471AP2/ERF domain
CDDcd000185.27E-19261325No hitNo description
SuperFamilySSF541713.53E-14261326IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-12262326IPR001471AP2/ERF domain
SMARTSM003802.3E-21262331IPR001471AP2/ERF domain
PROSITE profilePS5103217.293262325IPR001471AP2/ERF domain
PRINTSPR003674.6E-6263274IPR001471AP2/ERF domain
PfamPF008476.8E-10360411IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17360420IPR016177DNA-binding domain
CDDcd000181.02E-24360421No hitNo description
Gene3DG3DSA:3.30.730.107.5E-18361419IPR001471AP2/ERF domain
SMARTSM003801.0E-33361425IPR001471AP2/ERF domain
PROSITE profilePS5103218.874361419IPR001471AP2/ERF domain
PRINTSPR003674.6E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MEVTSSSDPH HHYNHQQAQA SSASAQLPSS FYNLSPLCYE NGGFHSPLTV MPLKSDGSLC  60
IMEALTRSQT EGMVPNSSPK LEDFLGGASM GAHDYGAQQR EVAMALSLDS LYYNENTETE  120
QHYYSGIPFH GAYQAQMEEE SSKQAHIVGS DSHQMTQNWV TRQYSAAPHT FSQQQMSNNS  180
LENGGGSGSV NGGMQCGDLQ SLTLSMSPGS QSSCVTAPRQ ISPTETECLA IETKKRGSGK  240
LSQTKQPVHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM  300
EEKAARAYDL AALKYWGSST HINFPLEDYT TQIEEMKNMN RQEYVAHLRR KSSGFSRGAS  360
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFATQEEAAE AYDIAAIKFR GVNAVTNFDI  420
TRYDVEKIMA SNTLLAGEFA RRNKEVEPNK QVIEYSSPAQ NNVEASPPET SHGNSSDWKM  480
ALFQAAQQQQ ETAATYVQTL DQKSMSSGNY RSPATFSMAL QDLIRIESVN SSQQLMDESA  540
KAGAQFSNPS SLVTSLSSSR EDSPDKSAPT MLFAKPPMAS KFISPSTSVA VSSWFPSAQL  600
RPAASISMSQ LPLFAAWSDT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02623.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458882.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-157ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A3S8T9300.0A0A3S8T930_FRAAN; Transcription factor AP22
STRINGXP_004292770.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-149AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]