PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02620.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 591aa    MW: 63699.1 Da    PI: 9.3178
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02620.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.84.4e-24226270145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e 
  mrna02620.1-v1.0-hybrid 226 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHINRGRHRSRKPVEG 270
                              79****************************************985 PP
2QLQ62.51.1e-21158194137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  mrna02620.1-v1.0-hybrid 158 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 194
                              59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-13158194IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-16159192IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.91159194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.54226270IPR014977WRC domain
PfamPF088793.0E-20227269IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MTKALLASTC GVFFLMDFGV VGLDGFGGSD IGFGFVASSD QEGKNKRYGS GFQKQERSGT  60
VDEEQHWRSS KQAKSSDDFS APKKMLQLNT GLMRTNSTSF DGQQLLSFSS SPKSEAQNAS  120
LPSYFQQAVS AYHRNSGINN SGSLNGATVH WTIAGGRGPF TPSQWMELEH QALIYKYITA  180
NVPIPSNLLI PIKKALDSAG LFSPGLLRSN AFGWGSIHLG YANNTDPEPG RCRRTDGKKW  240
RCWRDAVPDQ KYCERHINRG RHRSRKPVEG QTGQSVAGTA TPAPLKQVMP GGGGTSSLAI  300
ANQQLKSLQP AIAASNSSAA TQMSRMFMNK DSASERMQHS PDLSMLSKEN TLLNQKQQLG  360
FGESSRSEFG LVTSDALLNP SQKRSLSSMM SCGNYGGASQ NLTVQETDSQ HPLRHFIDDW  420
PKNPSDRPAV VAWPDQLDMQ SARTQLSISI PKAASSDFIP STSSTNNEKL TLSPLRMSHE  480
LDTVPMGLGV SSSVEQHKKQ ANWIPITWEP SLGGPLGEVL HHTNIKAAEC KKSSVLNLMT  540
EGWDNNSPSS LGSSPTGVLQ RTAFGSVSSS AGSSPRAENR SAHEGASHCN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02620.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292769.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLA0A2P6Q1170.0A0A2P6Q117_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004292769.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-89growth-regulating factor 1