PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02560.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 378aa    MW: 41690.8 Da    PI: 4.8891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02560.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-103023421055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  mrna02560.1-v1.0-hybrid 302 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 342
                              9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-14291358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.977292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-12301346No hitNo description
PfamPF000102.3E-7302342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MESLGVFAEG DQWECFSRLF SNEDQELDFT PHFLGHEGSS FPFQHNEGFN FETQTILCPD  60
PEAGDEMGLT RFNHSFFHSL DTVNSNMHYL PQEDSSGYTA SSGIFTASLN PENYYFGGNS  120
CYTPMSNDMS TSIDVSMTGN VDGNVGSFIP AFSDTGNVCN TGDSGSGRMG ISNDSQAPKE  180
LHLKRMHDAA EEKSNTENAS ESNPKKRPRL SKEKTKKNNV RPKKSQKASS DAKVMKDENE  240
SNAAVDRQSS SSYNSSEDDN ASQETNGAGE VSDPKSSSAL NLNGKTRANR GSATDPQSLY  300
ARKRRERINE RLRVLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDMWMYAPIA  360
YNGMDIGLDL HKMSPLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02560.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459816.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A2P6Q0X60.0A0A2P6Q0X6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292754.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-49ROOT HAIR DEFECTIVE 6-LIKE 2