PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02557.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 22723.9 Da PI: 7.9223 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.5 | 5e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++ Cvl+ ++ p++q ++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++ mrna02557.1-v1.0-hybrid 2 SCNGCRVLRKGCSETCVLRSCLrwidsPESQGYATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNPVSGAVGILS 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelal 96 ++++++++++++++l mrna02557.1-v1.0-hybrid 88 SGNWHVCHAAVQTVL 102 ********9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.824 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SCLRWIDSPE SQGYATLFLA KFFGRSDLLS FISAVPENQR 60 PALFQSLLFE ACGRTVNPVS GAVGILSSGN WHVCHAAVQT VLSGGVLRPL PAMLTPNLDE 120 SSQVTINRGS CGIQNPRYTS VPSMFDDDVE PLDVGLSLKP NLAAAGGRGR ARGWSCAVDR 180 MRDTVSFSSE DSVMTTSGGG GGSDGGRKLL NLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02557.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290959.1 | 1e-155 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 2e-61 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2P6Q0V7 | 1e-115 | A0A2P6Q0V7_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004290959.1 | 1e-155 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 9e-64 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | mrna02557.1-v1.0-hybrid |