PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02509.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 364aa MW: 41187.8 Da PI: 9.216 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.6e-15 | 9 | 91 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl + s++l++p+ f++++ g++++ l+ + g+ W v+l + ++r v+ +GW++F+k + L+ gDf++F+ldg+ mrna02509.1-v1.0-hybrid 9 FFKVL--VGDF-SQQLCIPRAFVKNFnGHVPR---FCGLRGPCGNLWAVNL--KVIRNRLVFHDGWQSFAKHHFLEIGDFLTFTLDGE 88 56666..3444.456********888666654...4899************..999999**************************998 PP SEE CS B3 88 sef 90 s f mrna02509.1-v1.0-hybrid 89 SIF 91 777 PP | |||||||
2 | B3 | 38 | 2.9e-12 | 152 | 239 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 fk++ + + l+ + l +p + +++ g+ ++kt++l+d+sg+ W++kl + + ++ + k W + +++n++ gD+++++++++ mrna02509.1-v1.0-hybrid 152 FKTTFTRS-LRYN-LKIPARVVKAAGLM--SNKTIMLQDPSGKPWSIKL--TETTRGQLRMKDWYKCCEENQISYGDTLIIEVVKH 231 55554433.3333.99******999888..6679***************..88888877778********************9999 PP SEE..EEE CS B3 88 sefelvvk 95 s f+l+v+ mrna02509.1-v1.0-hybrid 232 SVFQLHVH 239 ***99997 PP | |||||||
3 | B3 | 43.7 | 4.8e-14 | 264 | 350 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffk++ + ++ + l++p++ +++ g skt++l+d+ r+W++kl ++ + gr ++ GW + +++n++ +gD++v+++++ mrna02509.1-v1.0-hybrid 264 FFKTMFKRSMR-YD-LIIPNRIVRAAGP---ISKTIVLKDPAERQWSIKL-HETTMGRLRME-GWGKCCEENQISTGDTIVIEVVK 342 77877554444.44.9*******88873...689****************.56666777777.********************999 PP SSEE..EE CS B3 87 rsefelvv 94 +s f+l+v mrna02509.1-v1.0-hybrid 343 HSVFQLHV 350 99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.71E-23 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-21 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.52 | 6 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.21E-18 | 7 | 96 | No hit | No description |
Pfam | PF02362 | 1.8E-12 | 9 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-13 | 9 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-15 | 145 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-14 | 146 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.278 | 149 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-10 | 151 | 239 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-10 | 151 | 244 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.96E-6 | 151 | 240 | No hit | No description |
SuperFamily | SSF101936 | 6.08E-13 | 259 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.447 | 262 | 354 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-14 | 263 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-12 | 264 | 350 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-9 | 264 | 354 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.44E-11 | 264 | 352 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MELEDRPSFF KVLVGDFSQQ LCIPRAFVKN FNGHVPRFCG LRGPCGNLWA VNLKVIRNRL 60 VFHDGWQSFA KHHFLEIGDF LTFTLDGESI FDVIIYGKSY CEKNIEAAKN MIGDVVDRTI 120 NTDIILGKRL APDLVEETSI GPISSNPANL FFKTTFTRSL RYNLKIPARV VKAAGLMSNK 180 TIMLQDPSGK PWSIKLTETT RGQLRMKDWY KCCEENQISY GDTLIIEVVK HSVFQLHVHK 240 VGAALDVVEE TSMVPFSINP ANPFFKTMFK RSMRYDLIIP NRIVRAAGPI SKTIVLKDPA 300 ERQWSIKLHE TTMGRLRMEG WGKCCEENQI STGDTIVIEV VKHSVFQLHV YKAGATLDVK 360 TQS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02509.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304357.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A2P6RE48 | 1e-136 | A0A2P6RE48_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004304357.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna02509.1-v1.0-hybrid |