PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02470.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 46382.7 Da PI: 7.8295 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g mrna02470.1-v1.0-hybrid 71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-15 | 71 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-9 | 71 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 72 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 72 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-19 | 72 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 117 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MASSSSDPGP KTESGSGSGG GGGGGAEASE AAPNDQQLLY RGLKKAKKER GCTAKERISK 60 MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL 120 AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGMS KYRALSSRWE 180 PSFGRMGGSE YFNSIHYGTG DDQATENEFL GTFCIERKID LTSYIKWWGP NKTRQAEGII 240 KSSEDVKHGF AGDSGCELKT LEWETQPTEP FQMPCLGVCH EGEKQKGARV SAMSILSRSA 300 AYKSLQEKAS IKQEKNADND ENENKNMIHK KDYGKEIEKP SSHDGGDERL SAALGMSGGL 360 SLQRNTYPLT PFLSAPLLTN YNMIDPLVDP ILWTSLAPNL PEVTKTETSA SFTLFRPDE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02470.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304343.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-168 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A3Q8TBC6 | 0.0 | A0A3Q8TBC6_FRAAN; Transcription factor AP214 | ||||
STRING | XP_004304343.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-157 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna02470.1-v1.0-hybrid |