PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02470.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 420aa    MW: 46382.7 Da    PI: 7.8295
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02470.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1371127155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  mrna02470.1-v1.0-hybrid  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127
                              57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1571136IPR016177DNA-binding domain
PfamPF008475.9E-971127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-1272136IPR001471AP2/ERF domain
PROSITE profilePS5103218.51872135IPR001471AP2/ERF domain
SMARTSM003805.3E-1972141IPR001471AP2/ERF domain
PRINTSPR003674.1E-57384IPR001471AP2/ERF domain
PRINTSPR003674.1E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASSSSDPGP KTESGSGSGG GGGGGAEASE AAPNDQQLLY RGLKKAKKER GCTAKERISK  60
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGMS KYRALSSRWE  180
PSFGRMGGSE YFNSIHYGTG DDQATENEFL GTFCIERKID LTSYIKWWGP NKTRQAEGII  240
KSSEDVKHGF AGDSGCELKT LEWETQPTEP FQMPCLGVCH EGEKQKGARV SAMSILSRSA  300
AYKSLQEKAS IKQEKNADND ENENKNMIHK KDYGKEIEKP SSHDGGDERL SAALGMSGGL  360
SLQRNTYPLT PFLSAPLLTN YNMIDPLVDP ILWTSLAPNL PEVTKTETSA SFTLFRPDE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02470.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304343.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-168AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3Q8TBC60.0A0A3Q8TBC6_FRAAN; Transcription factor AP214
STRINGXP_004304343.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-157AP2 family protein