PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02453.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 177aa    MW: 18727.4 Da    PI: 9.4878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02453.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.81.4e-08933125
                             S---SHHHHHHHHHHHHHHHHHHHH CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                             k+ien   rqvtfsk r g++KKA 
  mrna02453.1-v1.0-hybrid  9 KKIENLNSRQVTFSKCRCGLFKKAV 33
                             68**********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.6137IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-10137IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-7155IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-81032IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGWGKIEIKK IENLNSRQVT FSKCRCGLFK KAVPLGLASL VMFDASLASS HRSLKGIGGG  60
GSYYSSHYVQ AFPDPLAGAL KWSGLGPGAA LGAVVAHGVD RSSGNDGGGD QEDERPSTAR  120
LGPIIDPARA RPGMLWAWAM GWAGLGLIFE YMGRPEPEPV KKWANLGWPE HGPKPD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02453.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-12AGAMOUS-like 15