PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02453.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 18727.4 Da PI: 9.4878 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.8 | 1.4e-08 | 9 | 33 | 1 | 25 |
S---SHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAe 25 k+ien rqvtfsk r g++KKA mrna02453.1-v1.0-hybrid 9 KKIENLNSRQVTFSKCRCGLFKKAV 33 68**********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.6 | 1 | 37 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-10 | 1 | 37 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-7 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-8 | 10 | 32 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGWGKIEIKK IENLNSRQVT FSKCRCGLFK KAVPLGLASL VMFDASLASS HRSLKGIGGG 60 GSYYSSHYVQ AFPDPLAGAL KWSGLGPGAA LGAVVAHGVD RSSGNDGGGD QEDERPSTAR 120 LGPIIDPARA RPGMLWAWAM GWAGLGLIFE YMGRPEPEPV KKWANLGWPE HGPKPD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02453.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 6e-12 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Phytozome | mrna02453.1-v1.0-hybrid |