PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02444.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 402aa    MW: 44335.6 Da    PI: 6.7849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02444.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.34.9e-091812205390
                      NAM  53 aeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                               ee+e+yfFs+rdkky++gk ++r+t   +g+Wkatg ++
  mrna02444.1-v1.0-hybrid 181 REEEEMYFFSPRDKKYPNGKLPSRTTGggNGFWKATGIQN 220
                              356799******************99877899*****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd062223.30E-8125175No hitNo description
PfamPF134565.1E-6126175No hitNo description
SuperFamilySSF1019411.83E-9175240IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSCLLCNHDH EDGVHLLGNC PYAQEAWIAA SLQPVVGTTN MKDHVLAISQ SVPKEKFAQV  60
LMVLWSIWTN MNSQLWENKR HRPMDAVLLN FGWHNDFIKT NGSEAAAQPH QIMHWIKPEL  120
GWVKCNSDGA FISGTRRGGC GVVIRNESGD FMAGAPKPCR QWTSSFHVEL LALLEEIHKF  180
REEEEMYFFS PRDKKYPNGK LPSRTTGGGN GFWKATGIQN AGKPCTDDNR LDDLVLCKVY  240
PSKMSKPNPN TLHAKKTEMS DSVPLEQDLP VLERSAVTTN LGELVNVTNL GARSHAHHQQ  300
NLSLIPSSSQ LPVIDSVSTA ISSLAGNMMN SSNPAVINSV ASAIASLASG LVFPDMALQQ  360
DHQSQPSLDN GCLPLRYRSV ITIMMIGIMV PFDDMPVEFR Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02444.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6REC52e-59A0A2P6REC5_ROSCH; Putative transcription factor NAM family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-10NAC family protein