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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna02419.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | bZIP | ||||||||
| Protein Properties | Length: 136aa MW: 15299.8 Da PI: 9.469 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 21.8 | 4.2e-07 | 82 | 112 | 21 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkelee 51
R+ K+a+ eeLe+kv+ L++eN + kkele+
mrna02419.1-v1.0-hybrid 82 RKNKRAYREELERKVEHLKQENARRKKELET 112
999********************99999986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.20.5.170 | 1.4E-5 | 82 | 111 | No hit | No description |
| CDD | cd14686 | 1.10E-5 | 82 | 111 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 136 aa Download sequence Send to blast |
MEETWRQTYL ASLSSSAQAP FANDVPHPHN YSSTAAHDPT TSSNFPHPMM QNYQLFCYNG 60 PLIINPNQGF DNTSTSSSFG TRKNKRAYRE ELERKVEHLK QENARRKKEL ETSIAAASGQ 120 LSITHNHRRS SSALF* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna02419.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011460679.1 | 3e-90 | PREDICTED: protein FD-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF34093 | 2 | 2 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna02419.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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