PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02402.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LSD | ||||||||
Protein Properties | Length: 126aa MW: 13684.5 Da PI: 5.5113 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.8 | 8.4e-14 | 36 | 60 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP+GA++V+C++C+tV mrna02402.1-v1.0-hybrid 36 CGSCRRLLTYPPGAKHVQCSCCQTV 60 ************************9 PP | |||||||
2 | zf-LSD1 | 45.3 | 1.4e-14 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C tlL+YP+GApsVRC++C +V mrna02402.1-v1.0-hybrid 74 CDSCTTLLMYPYGAPSVRCSSCSFV 98 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.0E-18 | 33 | 63 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.5E-12 | 36 | 60 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.9E-12 | 71 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.5E-12 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
METEEQQVDE APPQETQPVV SQPPPPPISE IAQMVCGSCR RLLTYPPGAK HVQCSCCQTV 60 NFVLEAHQVG QVKCDSCTTL LMYPYGAPSV RCSSCSFVTE VKDHNMRPPW SVQQGQPTAP 120 SNSVH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02402.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294024.2 | 2e-87 | PREDICTED: protein LOL2 | ||||
Swissprot | O65426 | 6e-42 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A2P6Q408 | 2e-71 | A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family | ||||
STRING | XP_004294024.1 | 1e-86 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-43 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna02402.1-v1.0-hybrid |