PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02402.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LSD
Protein Properties Length: 126aa    MW: 13684.5 Da    PI: 5.5113
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02402.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.88.4e-143660125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             Cg+Cr lL YP+GA++V+C++C+tV
  mrna02402.1-v1.0-hybrid 36 CGSCRRLLTYPPGAKHVQCSCCQTV 60
                             ************************9 PP

2zf-LSD145.31.4e-147498125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             C +C tlL+YP+GApsVRC++C +V
  mrna02402.1-v1.0-hybrid 74 CDSCTTLLMYPYGAPSVRCSSCSFV 98
                             **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.0E-183363IPR005735Zinc finger, LSD1-type
PfamPF069439.5E-123660IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.9E-127199IPR005735Zinc finger, LSD1-type
PfamPF069436.5E-127498IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
METEEQQVDE APPQETQPVV SQPPPPPISE IAQMVCGSCR RLLTYPPGAK HVQCSCCQTV  60
NFVLEAHQVG QVKCDSCTTL LMYPYGAPSV RCSSCSFVTE VKDHNMRPPW SVQQGQPTAP  120
SNSVH*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02402.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294024.22e-87PREDICTED: protein LOL2
SwissprotO654266e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A2P6Q4082e-71A0A2P6Q408_ROSCH; Putative transcription factor Znf-LSD family
STRINGXP_004294024.11e-86(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-43lsd one like 2