PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02365.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 289aa    MW: 31126.2 Da    PI: 9.5198
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02365.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.11.9e-383090262
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             +++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++
  mrna02365.1-v1.0-hybrid 30 HHEPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 90
                             57889***************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-243088IPR003851Zinc finger, Dof-type
PfamPF027013.3E-333388IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7423488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQGEQDHQQH NNQDRKVNQQ QRQQGQQQQH HEPQKCPRCE SLNTKFCYYN NYSLSQPRYF  60
CKACRRYWTQ GGTLRNVPVG GGCRKGKRAK TMSSSSSATS SHSVLQPQQQ PQDHQLHERA  120
LMMSTGPAAL NSLSGSQYYS GGAGYLTSMP FTQNLDHLGG SGQLGSGGGA SNLGLLHGFN  180
AISSYGQSQM QSQLLKSMET PPLYPSEDHR GLLLQPGMPS GSMTDWPKFI NKSHSSASAA  240
AASTGHSAPW STTMGNNTST SSGKVGSSLN SSQRPDDHAA SFSTGLPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02365.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460662.11e-148PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
TrEMBLA0A2P6Q4611e-132A0A2P6Q461_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004294005.11e-142(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-33OBF binding protein 4