PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna02359.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 260aa MW: 29392.3 Da PI: 7.1601 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 165 | 218 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWtp+LH++Fv+av++LGG+++AtPk+il++m+v+g+t++h+kSH Q YR+ mrna02359.1-v1.0-hybrid 165 PRIRWTPDLHRCFVHAVDSLGGEDRATPKKILQIMNVEGVTINHIKSHVQTYRS 218 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.609 | 161 | 221 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 162 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-15 | 164 | 219 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-24 | 165 | 219 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 168 | 217 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAPRLRYSKP DSLHFPAALN LSVISTAMDA MFPPWDRSVS PLLGETLIYW LKCPSQDDLK 60 LSLEDDDKMS KGVTFSLFML FPPRYGNERV QLGEGSSVRR SVDNGQQLQL KDTPHFSSYE 120 NHETRNEPQQ VQVHRENLPA EMMILQRPTG PSTAMLPHVS SNRVPRIRWT PDLHRCFVHA 180 VDSLGGEDRA TPKKILQIMN VEGVTINHIK SHVQTYRSIK HEEHIQEAAA RANEYVREQT 240 PAESVNSSAT VVTSSWLHC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-20 | 166 | 221 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna02359.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P6Q2J4 | 7e-37 | A0A2P6Q2J4_ROSCH; Putative transcription factor MYB-HB-like family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 8e-24 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna02359.1-v1.0-hybrid |