PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02272.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 379aa MW: 42639.4 Da PI: 6.3458

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02272.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.1	1.8e-11	288	352	1	66
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpp 66 l +lLl++Ae v +++e+a++lL + + as +g+++qR++ yf+eAL++r+ + +++y++ mrna02272.1-v1.0-hybrid 288 LAHLLLAIAEKVGYQQFERASRLLVQCEWSASLKGTTVQRVVCYFAEALRERIKK-ETGMYASKGN 352 579***************************************************9.6666655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.1E-9	288	352	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MANAFFSFTP FDFGIQGGLS PPHLEDYDKE EDTVMFNVGK GDHLFGLDDQ LGEMNTLSSE 60 HGFYQDNKAK KVVVVSHLSK EQNQHHDIDQ QQQQQKTKPS FLILDNFNFE TVSSQQGFYH 120 AGKDDQHHHY QQQQQQSKST SSILENFSSF DFSFPSGQAT QTIEDGARFT LQSQMGGSNI 180 VETNKQMPPP QSSLATQELL NSYGSAFKKL KGERQTSSRA AKGIETYQNS NYVVNGKQKL 240 STEEIMRVAG ARYVQFSGQG YDDFYMPMHH FGYALPGLCE EETKDVELAH LLLAIAEKVG 300 YQQFERASRL LVQCEWSASL KGTTVQRVVC YFAEALRERI KKETGMYASK GNQEMSHYVQ 360 GLGQTLHTSY ATKKSLSI*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MANAFFSFTP FDFGIQGGLS PPHLEDYDKE EDTVMFNVGK GDHLFGLDDQ LGEMNTLSSE  60
HGFYQDNKAK KVVVVSHLSK EQNQHHDIDQ QQQQQKTKPS FLILDNFNFE TVSSQQGFYH  120
AGKDDQHHHY QQQQQQSKST SSILENFSSF DFSFPSGQAT QTIEDGARFT LQSQMGGSNI  180
VETNKQMPPP QSSLATQELL NSYGSAFKKL KGERQTSSRA AKGIETYQNS NYVVNGKQKL  240
STEEIMRVAG ARYVQFSGQG YDDFYMPMHH FGYALPGLCE EETKDVELAH LLLAIAEKVG  300
YQQFERASRL LVQCEWSASL KGTTVQRVVC YFAEALRERI KKETGMYASK GNQEMSHYVQ  360
GLGQTLHTSY ATKKSLSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02272.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024174485.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2P6PI64	0.0	A0A2P6PI64_ROSCH; Putative transcription factor GRAS family
STRING	XP_004301794.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Link Out ? help Back to Top
Phytozome	mrna02272.1-v1.0-hybrid