PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02269.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 314aa    MW: 36198.3 Da    PI: 4.8474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02269.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-3089147259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
  mrna02269.1-v1.0-hybrid  89 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTSSHNHP 147
                              699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-3181149IPR003657WRKY domain
SuperFamilySSF1182901.44E-2585149IPR003657WRKY domain
SMARTSM007741.2E-3588148IPR003657WRKY domain
PROSITE profilePS5081131.13589149IPR003657WRKY domain
PfamPF031062.7E-2590147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEIKIWKYPL HGFQWLLLLH LLPFAKTQIQ EMDENLSSPE HDSEVSKELI MIRPETQASK  60
RRKVAHQKTV VTVKIGPNVG KLKNEGPPSD FWSWRKYGQK PIKGSPYPRG YYRCSTSKGC  120
SAKKQVERSK TDASVLIITY TSSHNHPGPD VTSTTKYQNP PPKEAQMQQD SEDDDHDLKA  180
EVAKEEEQEP EPAPEPEQEQ EQEQEQERKV DVQQEPDHFH YIQSPIRSSQ DIVIYQEDPF  240
SSGNHLEKTL LDEHPQSLCY SQLMSMSFST TPKSEEEEDF YDELEELLPT SSYFPSFMRS  300
NLSQLERIPF VPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21891491779Disease resistance protein RRS1
5w3x_D2e-21891491779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02269.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1803060.0DQ180306.1 Fragaria x ananassa clone PBCESTFXA1 SSR marker.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300445.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A2P6PI521e-164A0A2P6PI52_ROSCH; Putative transcription factor WRKY family
STRINGXP_004300445.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-35WRKY DNA-binding protein 35