PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02202.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 432aa    MW: 47074.9 Da    PI: 7.4808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02202.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-1093117126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt+lC+ f++ GtC+y  +C+FaH+
  mrna02202.1-v1.0-hybrid  93 FKTKLCCKFRA-GTCPYVTNCNFAHS 117
                              69*********.*************8 PP
2zf-CCCH18.34.3e-06166191126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              yk + C+ f+    C+yGd+C+F H+
  mrna02202.1-v1.0-hybrid 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191
                              77888********************7 PP
3zf-CCCH43.16.7e-14228253126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  tG+C++G++C+FaHg
  mrna02202.1-v1.0-hybrid 228 WKTRICNKWELTGYCPFGSKCHFAHG 253
                              8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.69E-890123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13192119IPR000571Zinc finger, CCCH-type
SMARTSM003560.00392118IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-793117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-9163193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7164193IPR000571Zinc finger, CCCH-type
SMARTSM003560.058165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183165193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-16224257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-9225258IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422227255IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSYGGRETNV VQVITGNGGG GDMWSGDQAV WATEDEYQVW NNGDAMGDTM SNSNYDQRQS  60
QSRSGSEPPN KKSRNTPDVT SSNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE  120
LRRPPPNWQE IVAAHEEEKA VSSEPREEFQ IPIVTTGYGV ETQRSYKGRH CKKFYTEEGC  180
PYGDNCTFLH DESSKNRESV AISLGPGGYG GAAAAAAAGG ANNKPSNWKT RICNKWELTG  240
YCPFGSKCHF AHGVAELHRY GGGLVDGEIR DSSVPLDNKQ GGVPLKTPAD NVVVSVPIVP  300
HSDLYHGVPS QRLSILHNGH LYPPWSLLGN STGNLHKRLQ DHVAVTFLLE VDFVCLLQVQ  360
VDARLVGVSP YIPSVNFVVA NVTEAIVSLS HEGSCTVTKF RAVASGCILC NIYALRKLRS  420
DPLKLPFQTL D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02202.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300410.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-109C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2P6PA580.0A0A2P6PA58_ROSCH; Putative transcription factor C3H family
STRINGXP_004300410.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-104C3H family protein