PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02091.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 365aa MW: 42273.5 Da PI: 4.6093

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02091.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.7	7e-14	126	210	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt++ v +L+e+ ++ +l+r++l+ +W +v++k++e+ ++ers kqC+ ++ l+++ykk+k+ ++++ + ss++ y++++ mrna02091.1-v1.0-hybrid 126 EWTEHAVFVLLEVWGDRFLQLGRKSLRSEDWGDVAAKVSEGcKMERSEKQCRRMLDMLKRKYKKEKAKMEEG--GGSSNWGYYKKM 209 5***********************************876378**********************97..7888****** PP trihelix 86 e 86 e mrna02091.1-v1.0-hybrid 210 E 210 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-18	125	211	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDDMEDDQRY HPKPYSLNHH SSSNRRNPHI RNTPYSRPPP PNRYSPEDDD DAIEDDLDEE 60 SYGKQDDVVV VAEQYHQHHP NRGFDAENGW EWHPKKRKLK NLDPGSGYEF APRVKMPGRV 120 GSGQEEWTEH AVFVLLEVWG DRFLQLGRKS LRSEDWGDVA AKVSEGCKME RSEKQCRRML 180 DMLKRKYKKE KAKMEEGGGS SNWGYYKKME MLMVNSMRQE CGLACGVDNG EYVFMNTRVY 240 LEKSNGFDEM MDSPGESEDD DENENENVSG QNGFGFALPR QGGSSYRVLA ESIQKFGEIY 300 ENLESRKRQQ MMELEKMRRE FNKEMEVQKK QILERAQAEI AKIQEAGDDD DDEDSDTSAE 360 DLTE*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDDMEDDQRY HPKPYSLNHH SSSNRRNPHI RNTPYSRPPP PNRYSPEDDD DAIEDDLDEE  60
SYGKQDDVVV VAEQYHQHHP NRGFDAENGW EWHPKKRKLK NLDPGSGYEF APRVKMPGRV  120
GSGQEEWTEH AVFVLLEVWG DRFLQLGRKS LRSEDWGDVA AKVSEGCKME RSEKQCRRML  180
DMLKRKYKKE KAKMEEGGGS SNWGYYKKME MLMVNSMRQE CGLACGVDNG EYVFMNTRVY  240
LEKSNGFDEM MDSPGESEDD DENENENVSG QNGFGFALPR QGGSSYRVLA ESIQKFGEIY  300
ENLESRKRQQ MMELEKMRRE FNKEMEVQKK QILERAQAEI AKIQEAGDDD DDEDSDTSAE  360
DLTE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02091.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288693.1	0.0	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_011458483.1	0.0	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_011458517.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A2P6RJK9	1e-172	A0A2P6RJK9_ROSCH; Putative transcription factor Trihelix family
STRING	XP_004288693.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-64	Trihelix family protein

Link Out ? help Back to Top
Phytozome	mrna02091.1-v1.0-hybrid