PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna02016.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 373aa MW: 41606.6 Da PI: 4.5108

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna02016.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58	3.3e-18	5	112	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 +p+GfrFhPtd+el+ +yL k++ ++ + ++++d+y ++ePw++ + + + +++++ fF+k +k+ ++g+r r + sg+ mrna02016.1-v1.0-hybrid 5 MPVGFRFHPTDQELIGHYLSTKTNPNSDPW---VSNIDLYgEAEPWTIWEDHGGpllDDEDLIFFTKLKKN-KQGHRICRRIGSGT 86 699*****************99999666...8999999457*75333345578899999998765.679******* PP NAM 83 Wkatgkdkevlsk..kgelvglkktL 106 W++ k++++k +++ +g k+ L mrna02016.1-v1.0-hybrid 87 WSQGELPKPIFAKnnQETPIGKKTKL 112 **********94444447877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.22E-16	4	112	IPR003441	NAC domain
PROSITE profile	PS51005	18.048	5	151	IPR003441	NAC domain
Pfam	PF02365	3.9E-10	6	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGRGMPVGFR FHPTDQELIG HYLSTKTNPN SDPWVSNIDL YGEAEPWTIW EDHGGPLLDD 60 EDLIFFTKLK KNKQGHRICR RIGSGTWSQG ELPKPIFAKN NQETPIGKKT KLSKRPSPSQ 120 KCQDGRNPKS LRLSDDSITT NEAALSLNQR RRGPNPDRQF DTHDQEHLLL QGNTNAGHVD 180 YALEQLQRDA VSEHQQQHTC SSSFAQPKTT VVDVFVSENA HSEGTDDCLG VPLEVAQGDT 240 LFPALSEQQT SFMSQMQAIH SEENESGHAR LEDTDWHGIE LEAIPERQQP AADQNALVIS 300 KLQVSTNDEE FSIACDDFNK LPMDDAYINS FEFSNYIFGD EFLSGGDDIG TADILQGSSS 360 FSDLLEDQHH QV*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGRGMPVGFR FHPTDQELIG HYLSTKTNPN SDPWVSNIDL YGEAEPWTIW EDHGGPLLDD  60
EDLIFFTKLK KNKQGHRICR RIGSGTWSQG ELPKPIFAKN NQETPIGKKT KLSKRPSPSQ  120
KCQDGRNPKS LRLSDDSITT NEAALSLNQR RRGPNPDRQF DTHDQEHLLL QGNTNAGHVD  180
YALEQLQRDA VSEHQQQHTC SSSFAQPKTT VVDVFVSENA HSEGTDDCLG VPLEVAQGDT  240
LFPALSEQQT SFMSQMQAIH SEENESGHAR LEDTDWHGIE LEAIPERQQP AADQNALVIS  300
KLQVSTNDEE FSIACDDFNK LPMDDAYINS FEFSNYIFGD EFLSGGDDIG TADILQGSSS  360
FSDLLEDQHH QV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna02016.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457372.1	1e-113	PREDICTED: NAC domain-containing protein 7-like
STRING	XP_004309935.1	1e-111	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	2e-12	NAC family protein

Link Out ? help Back to Top
Phytozome	mrna02016.1-v1.0-hybrid