PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01998.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 267aa    MW: 30401.8 Da    PI: 4.7728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01998.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  mrna01998.1-v1.0-hybrid 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                             799*****************99************************97 PP
2Myb_DNA-binding55.71.1e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+ TteE+e+++ ++++lG++ W++Ia+ +  gRt++++k++w++ 
  mrna01998.1-v1.0-hybrid  67 RGNYTTEEEEIIITLHEKLGNK-WSAIAAQLE-GRTDNEVKNHWHTN 111
                              899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.428961IPR017930Myb domain
SuperFamilySSF466891.15E-2911108IPR009057Homeodomain-like
SMARTSM007171.4E-111363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001675.66E-101661No hitNo description
PROSITE profilePS5129425.32862116IPR017930Myb domain
SMARTSM007176.4E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2569116IPR009057Homeodomain-like
CDDcd001671.11E-681112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVRTPCCDER GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TTEEEEIIIT LHEKLGNKWS AIAAQLEGRT DNEVKNHWHT NLKKRLMMNK  120
HKPSSVSITH DDHHHHEEME VPKSLDQPRS TAVTDDFGNA ETTVDDQISQ IDFLDYPELW  180
SPQPSSSELS SMTSDTTGVA ITAADGLVVE DNATSAAMET FFGDFSDNFW TEPFLADNDP  240
SGLYTPLMEP DFFYPSFDGD FLYGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01998.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293474.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2P6S2P81e-159A0A2P6S2P8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004293474.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-54myb domain protein 14