PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01997.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 290aa    MW: 33031.1 Da    PI: 5.5376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01997.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-131461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W +eEd++l  +++ +G  +W+  +++ g  R++k+c++rw +yl
  mrna01997.1-v1.0-hybrid 14 KGAWDAEEDDKLRSYIQSYGHWNWRQLPKYAGISRCGKSCRLRWKNYL 61
                             79******************99**********99************97 PP
2Myb_DNA-binding54.72.3e-1768112248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              g  T+eE+ l++++++qlG++ W+ Ia++++ gRt++++k++w++++
  mrna01997.1-v1.0-hybrid  68 GDYTEEEEALIIKLHEQLGNR-WSMIASKLP-GRTDNEIKNYWHTHM 112
                              568******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.309961IPR017930Myb domain
SuperFamilySSF466891.65E-2811108IPR009057Homeodomain-like
SMARTSM007175.6E-111363IPR001005SANT/Myb domain
PfamPF002497.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-211568IPR009057Homeodomain-like
CDDcd001671.59E-81661No hitNo description
PROSITE profilePS5129424.54762116IPR017930Myb domain
SMARTSM007177.9E-1766114IPR001005SANT/Myb domain
PfamPF002496.0E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2569115IPR009057Homeodomain-like
CDDcd001672.10E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVRAPFYDKS GVKKGAWDAE EDDKLRSYIQ SYGHWNWRQL PKYAGISRCG KSCRLRWKNY  60
LQPGVKHGDY TEEEEALIIK LHEQLGNRWS MIASKLPGRT DNEIKNYWHT HMKKKRTKEE  120
QNQTSSGHVV LPKDHQHSRD DHEYSSRQID SDDQTEAHES ATRNCNDACQ QLLHPQSSSA  180
VSPESTSSSS TSSAQYTSSS SSSLNHEARD STVFMNYLIV DRDIVMVSSS ETMISDQQYN  240
AGDFWSTPFL QDSISIESDI ISSSSSYLLP YDEGMDLFYQ VMPTPQDDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211525127MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01997.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295360.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A2P6S2Q31e-142A0A2P6S2Q3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004295360.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-54myb domain protein 14